RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 SYNE4Q8N205 404 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 OR5M3Q8NGP4 307 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 SNX33Q8WV41 574 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 COQ10AQ96MF6 247 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 DCLRE1CQ96SD1 692 aaKnown RBP2.52□□□□□ -2.01
CD44-212ENST00000524922 ZSWIM4Q9H7M6 989 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 EMC7Q9NPA0 242 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 TRPM5Q9NZQ8 1165 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 EIF2B4Q9UI10 523 aaKnown RBP2.52□□□□□ -2.01
CD44-212ENST00000524922 USP18Q9UMW8 372 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 ZKSCAN5Q9Y2L8 839 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 COX11Q9Y6N1 276 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 HECW1Q76N89 1606 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 RNF17Q9BXT8 1623 aaKnown RBP2.52□□□□□ -2.01
CD44-212ENST00000524922 ABCC3O15438 1527 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 A2ML1A8K2U0 1454 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 NUP153P49790 1475 aaKnown RBP2.52□□□□□ -2.01
CD44-212ENST00000524922 CAMSAP2Q08AD1 1489 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 NLRP1Q9C000 1473 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 SHANK2Q9UPX8 1470 aa2.52□□□□□ -2.01
CD44-212ENST00000524922 NCOA3Q9Y6Q9 1424 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 ARHGEF17Q96PE2 2063 aaPredicted RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 COL11A2P13942 1736 aaPredicted RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 ARID4BQ4LE39 1312 aaPredicted RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 CAMSAP1Q5T5Y3 1602 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 PIPSLA2A3N6 862 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 CCDC78A2IDD5 438 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 INO80B-WBP1J3KQ70 363 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 RNASET2O00584 256 aaKnown RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 KIAA0355O15063 1070 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 MAFGO15525 162 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 ADCY6O43306 1168 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 GAS7O60861 476 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 PPFIA4O75335 1185 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 ITGA10O75578 1167 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 C1QL1O75973 258 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 SPDEFO95238 335 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 NDUFA10O95299 355 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 CLEC2LP0C7M8 214 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 BPIP17213 487 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 CTSSP25774 331 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 MPLP40238 635 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 PTH2RP49190 550 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 KPNA1P52294 538 aaPredicted RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 RNASE9P60153 205 aaKnown RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 MEF2AQ02078 507 aaPredicted RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 APBA1Q02410 837 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 DUSP2Q05923 314 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 PPARAQ07869 468 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 TCEA2Q15560 299 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 MST1LQ2TV78 715 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 AGAP9Q5VTM2 703 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 BROXQ5VW32 411 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 Q6ZVL8 140 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 C16orf86Q6ZW13 317 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 OR10H5Q8NGA6 315 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 SLC35B2Q8TB61 432 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 RSAD2Q8WXG1 361 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 ASB10Q8WXI3 467 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 HOXB13Q92826 284 aaPredicted RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 ANO3Q9BYT9 981 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 INO80BQ9C086 356 aaPredicted RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 RIOX1Q9H6W3 641 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 IFT57Q9NWB7 429 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 SCOCQ9UIL1 159 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 CDY2AQ9Y6F7 541 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 PLXNC1O60486 1568 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 CEP170BQ9Y4F5 1589 aaPredicted RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 CDK13Q14004 1512 aaKnown RBP2.51□□□□□ -2.01
CD44-212ENST00000524922 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.51□□□□□ -2.01
CD44-212ENST00000524922 KIAA1107Q9UPP5 1409 aa2.51□□□□□ -2.01
CD44-212ENST00000524922 POLR2AP24928 1970 aaKnown RBP2.5□□□□□ -2.01
CD44-212ENST00000524922 KIF14Q15058 1648 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 RAPGEF6Q8TEU7 1601 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 ALKQ9UM73 1620 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 MAST3O60307 1309 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 DIP2CQ9Y2E4 1556 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 B5MCH6 92 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 DIRC3C9JPN6 131 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 KDM1AO60341 852 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 NRP2O60462 931 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 FKBP9O95302 570 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 CFIP05156 583 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 ZNF37AP17032 561 aaPredicted RBP2.5□□□□□ -2.01
CD44-212ENST00000524922 LSP1P33241 339 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 NEK4P51957 841 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 TP53BP2Q13625 1128 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 PRAMEF14Q5SWL7 426 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 B3GNTL1Q67FW5 361 aaPredicted RBP2.5□□□□□ -2.01
CD44-212ENST00000524922 FRMD7Q6ZUT3 714 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 FKBP9P1Q75LS8 142 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 JAZF1Q86VZ6 243 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 RASSF3Q86WH2 238 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 PLXDC1Q8IUK5 500 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 GLB1L2Q8IW92 636 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 NIM1KQ8IY84 436 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 RNF169Q8NCN4 708 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 SIMC1Q8NDZ2 872 aa2.5□□□□□ -2.01
CD44-212ENST00000524922 CPEB3Q8NE35 698 aaKnown RBP2.5□□□□□ -2.01
CD44-212ENST00000524922 OR14C36Q8NHC7 312 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms