RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	TMEM200C	A6NKL6	621 aa		5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	CDK11B	P21127	795 aa	Known RBP	5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	FAM102A	Q5T9C2	384 aa	Predicted RBP	5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	AFMID	Q63HM1	303 aa		5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	SEM1	Q6ZVN7	128 aa		5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	SLC35B2	Q8TB61	432 aa		5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	CHFR	Q96EP1	664 aa		5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	MRI1	Q9BV20	369 aa		5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	REXO4	Q9GZR2	422 aa	Known RBP	5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	AKIP1	Q9NQ31	210 aa		5.65	□□□□□ -1.5
MATR3-223	ENST00000514402	DKK2	Q9UBU2	259 aa		5.65	□□□□□ -1.5
MATR3-223	ENST00000514402		A0A087X1B8	175 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	DRGX	A6NNA5	263 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	RHOBTB3	O94955	611 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	ATP5J	P18859	108 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	GUCY2F	P51841	1108 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	SLC16A1	P53985	500 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	RNASE9	P60153	205 aa	Known RBP	5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	MXRA7	P84157	204 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	AMPD3	Q01432	767 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	SEPT2	Q15019	361 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	ATP2B3	Q16720	1220 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	BEAN1	Q3B7T3	259 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	AGAP9	Q5VTM2	703 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	METRNL	Q641Q3	311 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	ZNF627	Q7L945	461 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	ARHGEF19	Q8IW93	802 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	RHOT2	Q8IXI1	618 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	ZCRB1	Q8TBF4	217 aa	Known RBP	5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	CEP89	Q96ST8	783 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	C7orf25	Q9BPX7	421 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	ZNF768	Q9H5H4	540 aa	Known RBP	5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	MKS1	Q9NXB0	559 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	ATP11B	Q9Y2G3	1177 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	SIK3	Q9Y2K2	1263 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	MRFAP1	Q9Y605	127 aa		5.64	□□□□□ -1.51
MATR3-223	ENST00000514402	SHTN1	A0MZ66	631 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	FOXN1	O15353	648 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	RAMP2	O60895	175 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	GPR32	O75388	356 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	POMC	P01189	267 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	ZFP36	P26651	326 aa	Known RBP	5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	SLC6A9	P48067	706 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	BLOC1S1	P78537	153 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	PGM2L1	Q6PCE3	622 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402		Q6ZPA2	131 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	MIGA2	Q7L4E1	593 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	RPUSD2	Q8IZ73	545 aa	Known RBP	5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	RNF169	Q8NCN4	708 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	FAXDC2	Q96IV6	333 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	BRINP2	Q9C0B6	783 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	AJAP1	Q9UKB5	411 aa	Predicted RBP	5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	TRHDE	Q9UKU6	1024 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	DNM3	Q9UQ16	869 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	SPEF1	Q9Y4P9	236 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	FPGT-TNNI3K	V9GXZ4	949 aa		5.63	□□□□□ -1.51
MATR3-223	ENST00000514402	KLHL33	A6NCF5	533 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	MARCH11	A6NNE9	402 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	SGTA	O43765	313 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	NCR1	O76036	304 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	RAP2A	P10114	183 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	ALAS1	P13196	640 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	IARS	P41252	1262 aa	Known RBP	5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	ALDH1A3	P47895	512 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	CDKN1C	P49918	316 aa	Predicted RBP	5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	CHN2	P52757	468 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	MTM1	Q13496	603 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	MTMR1	Q13613	665 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	CLUL1	Q15846	466 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	PDCD4	Q53EL6	469 aa	Known RBP	5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	LAIR1	Q6GTX8	287 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	PRPF38A	Q8NAV1	312 aa	Known RBP	5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	FUBP3	Q96I24	572 aa	Known RBP eCLIP	5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	MLST8	Q9BVC4	326 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	SLC13A1	Q9BZW2	595 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	IKZF4	Q9H2S9	585 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	USP15	Q9Y4E8	981 aa	Predicted RBP	5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	PNPLA7	Q6ZV29	1317 aa		5.62	□□□□□ -1.51
MATR3-223	ENST00000514402	CENPVL1	A0A0U1RR11	272 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	SUV39H1	O43463	412 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	B3GALT2	O43825	422 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	NDUFS2	O75306	463 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	CFI	P05156	583 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	KRT4	P19013	534 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	GCSH	P23434	173 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	RAP2B	P61225	183 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	FAM189B	P81408	668 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	ATP8B2	P98198	1209 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	ITK	Q08881	620 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	UBXN2B	Q14CS0	331 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	PCSK4	Q6UW60	755 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	NRG4	Q8WWG1	115 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	JADE3	Q92613	823 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	HDAC10	Q969S8	669 aa		5.61	□□□□□ -1.51
MATR3-223	ENST00000514402	GABRD	O14764	452 aa		5.6	□□□□□ -1.51
MATR3-223	ENST00000514402	ZNF185	O15231	689 aa		5.6	□□□□□ -1.51
MATR3-223	ENST00000514402	DDC	P20711	480 aa		5.6	□□□□□ -1.51
MATR3-223	ENST00000514402	AVPR1B	P47901	424 aa		5.6	□□□□□ -1.51
MATR3-223	ENST00000514402	CTXN1	P60606	82 aa		5.6	□□□□□ -1.51
MATR3-223	ENST00000514402	CDC42EP1	Q00587	391 aa		5.6	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms