RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 DYMQ7RTS9 669 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 RBM23Q86U06 439 aaKnown RBP10.63□□□□□ -0.71
RNF4-221ENST00000513643 FAM178BQ8IXR5 827 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 IQUBQ8NA54 791 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 SMRP1Q8NCR6 262 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 RASSF8Q8NHQ8 419 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 MICAL1Q8TDZ2 1067 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 ADAMTS19Q8TE59 1207 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 SUSD6Q92537 303 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 HVCN1Q96D96 273 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 FAM193BQ96PV7 902 aaPredicted RBP10.63□□□□□ -0.71
RNF4-221ENST00000513643 C7orf25Q9BPX7 421 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 HERC2P3Q9BVR0 1158 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 COLEC11Q9BWP8 271 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 GPR62Q9BZJ7 368 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 TRIM9Q9C026 710 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 PLEKHA5Q9HAU0 1116 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 GDAQ9Y2T3 454 aa10.63□□□□□ -0.71
RNF4-221ENST00000513643 MYH15Q9Y2K3 1946 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 C19orf67A6NJJ6 358 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 ANKRD63C9JTQ0 380 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 K7ENM7 598 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 CLDN3O15551 220 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 MBTPS2O43462 519 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 TBCAO75347 108 aaKnown RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 CLTAP09496 248 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 CASP5P51878 434 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 SOX4Q06945 474 aaPredicted RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 KCNA1Q09470 495 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 BECN1Q14457 450 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 HSP90AA2PQ14568 343 aaPredicted RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 NOLC1Q14978 699 aaKnown RBP eCLIP10.62□□□□□ -0.71
RNF4-221ENST00000513643 SMAD2Q15796 467 aaKnown RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 UPP1Q16831 310 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 FOXD4L6Q3SYB3 417 aaPredicted RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 FOXD4L3Q6VB84 417 aaPredicted RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 ZBTB33Q86T24 672 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 SFR1Q86XK3 245 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 PDILTQ8N807 584 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 ACAP3Q96P50 834 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 KLHL5Q96PQ7 755 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 RPS6KC1Q96S38 1066 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 CCDC94Q9BW85 323 aaPredicted RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 FGFBP2Q9BYJ0 223 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 IGFLR1Q9H665 355 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 MAGEF1Q9HAY2 307 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 ENTPD7Q9NQZ7 604 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 TOPORSQ9NS56 1045 aaPredicted RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 CACNG4Q9UBN1 327 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 CPSF3Q9UKF6 684 aaKnown RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 ADAM28Q9UKQ2 775 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 PRG3Q9Y2Y8 225 aaPredicted RBP10.62□□□□□ -0.71
RNF4-221ENST00000513643 HCFC2Q9Y5Z7 792 aa10.62□□□□□ -0.71
RNF4-221ENST00000513643 POLR2DO15514 142 aaKnown RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 NR1I2O75469 434 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 KIF4AO95239 1232 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 KRT18P05783 430 aaKnown RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 CNPP09543 421 aaKnown RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 SLFN14P0C7P3 912 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 IL9P15248 144 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 HOXD13P35453 343 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 ME1P48163 572 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 SMAD4Q13485 552 aaKnown RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 KYAT1Q16773 422 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 TMEM132AQ24JP5 1023 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 ZBTB41Q5SVQ8 909 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 L1TD1Q5T7N2 865 aaKnown RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 PTCRAQ6ISU1 281 aaPredicted RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 ANKRD54Q6NXT1 300 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 FUT10Q6P4F1 479 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 DCLRE1AQ6PJP8 1040 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 CRELD2Q6UXH1 353 aaPredicted RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 EPM2AIP1Q7L775 607 aaPredicted RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 C3orf58Q8NDZ4 430 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 AUTS2Q8WXX7 1259 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 DHX58Q96C10 678 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 UROC1Q96N76 676 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 TSPAN18Q96SJ8 248 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 TCHPQ9BT92 498 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 LRRC27Q9C0I9 530 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 IKZF4Q9H2S9 585 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 CD320Q9NPF0 282 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 FNIP2Q9P278 1114 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 CD207Q9UJ71 328 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 KCNH3Q9ULD8 1083 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 BARX2Q9UMQ3 279 aaPredicted RBP10.61□□□□□ -0.71
RNF4-221ENST00000513643 MYH11P35749 1972 aa10.61□□□□□ -0.71
RNF4-221ENST00000513643 A0A1W2PQ27 194 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 A0A1W2PQ64 194 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 A0A1W2PQD8 194 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 CASTOR2A6NHX0 329 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 TISP43B9A030 160 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 HNRNPDLO14979 420 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 OGTO15294 1046 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 ACTN4O43707 911 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 CSPG5O95196 566 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 HOXB8P17481 243 aaPredicted RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 CYP3A5P20815 502 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 FGFR3P22607 806 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 LRPAP1P30533 357 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms