RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	FAM3C	Q92520	227 aa		13.95	□□□□□ -0.18
DDX41-215	ENST00000512431	IRF7	Q92985	503 aa		13.95	□□□□□ -0.18
DDX41-215	ENST00000512431	BRF1	Q92994	677 aa		13.95	□□□□□ -0.18
DDX41-215	ENST00000512431	FAM20A	Q96MK3	541 aa		13.95	□□□□□ -0.18
DDX41-215	ENST00000512431	PLA2G2F	Q9BZM2	168 aa		13.95	□□□□□ -0.18
DDX41-215	ENST00000512431	LMAN1L	Q9HAT1	526 aa		13.95	□□□□□ -0.18
DDX41-215	ENST00000512431	PCDHA4	Q9UN74	947 aa		13.95	□□□□□ -0.18
DDX41-215	ENST00000512431	GPR179	Q6PRD1	2367 aa		13.95	□□□□□ -0.18
DDX41-215	ENST00000512431	CASTOR2	A6NHX0	329 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	RHO	P08100	348 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	PTPN2	P17706	415 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	TANGO2	Q6ICL3	276 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431		Q6ZUG5	572 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	TRIM22	Q8IYM9	498 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	BLID	Q8IZY5	108 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	PAAF1	Q9BRP4	392 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	LXN	Q9BS40	222 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	TRMT61B	Q9BVS5	477 aa	Known RBP	13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	ZFP14	Q9HCL3	533 aa		13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	TDRD15	B5MCY1	1934 aa	Known RBP	13.94	□□□□□ -0.18
DDX41-215	ENST00000512431	GDF9	O60383	454 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	KIF4A	O95239	1232 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	TH	P07101	528 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	TDGF1	P13385	188 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	IFNAR1	P17181	557 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	ELF1	P32519	619 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	MBTD1	Q05BQ5	628 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	GRM2	Q14416	872 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	EPHA7	Q15375	998 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	RASEF	Q8IZ41	740 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	ZSWIM4	Q9H7M6	989 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	CACNG4	Q9UBN1	327 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431	CFAP47	Q6ZTR5	3102 aa		13.93	□□□□□ -0.18
DDX41-215	ENST00000512431		A0A1B0GUA9	196 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	ZNF197	O14709	1029 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	ADAM12	O43184	909 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	LRG1	P02750	347 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	SPIRE1	Q08AE8	756 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	NTRK3	Q16288	839 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	AMHR2	Q16671	573 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	AASDH	Q4L235	1098 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	PPP4R3A	Q6IN85	833 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	CEP68	Q76N32	757 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	CDR2L	Q86X02	465 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	C12orf50	Q8NA57	414 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	CCDC43	Q96MW1	224 aa	Known RBP	13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	NFKBIZ	Q9BYH8	718 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	AVEN	Q9NQS1	362 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	VAV3	Q9UKW4	847 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	CDY1	Q9Y6F8	540 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	NID2	Q14112	1375 aa		13.92	□□□□□ -0.18
DDX41-215	ENST00000512431	PRRG1	O14668	218 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	B4GALT5	O43286	388 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	HR	O43593	1189 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	SLC37A4	O43826	429 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	CEBPB	P17676	345 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	PML	P29590	882 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	GDI1	P31150	447 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	SSRP1	Q08945	709 aa	Known RBP	13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	CAPS	Q13938	189 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	CTTN	Q14247	550 aa	Known RBP	13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	TMEM132A	Q24JP5	1023 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	INF2	Q27J81	1249 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	SLC5A9	Q2M3M2	681 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	NCAPH2	Q6IBW4	605 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	GALNT17	Q6IS24	598 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	KRT25	Q7Z3Z0	450 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	LONP2	Q86WA8	852 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	TPH2	Q8IWU9	490 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	DYDC2	Q96IM9	177 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	ZNF334	Q9HCZ1	680 aa	Predicted RBP	13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	TRPV5	Q9NQA5	729 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	RGL1	Q9NZL6	768 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	MTRR	Q9UBK8	725 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	RALY	Q9UKM9	306 aa	Known RBP	13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	PIAS3	Q9Y6X2	628 aa		13.91	□□□□□ -0.18
DDX41-215	ENST00000512431	SHISA7	A6NL88	538 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	CHURC1-FNTB	B4DL54	471 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	ZNF263	O14978	683 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	TBX3	O15119	743 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	TRAPPC3	O43617	180 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	DGAT1	O75907	488 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	BAG4	O95429	457 aa	Known RBP	13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	CPA1	P15085	419 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	GCFC2	P16383	781 aa	Known RBP	13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	PSMC3	P17980	439 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	FNTB	P49356	437 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	SHC2	P98077	582 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	SATB1	Q01826	763 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	CYP4A11	Q02928	519 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	COL9A2	Q14055	689 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	LRRC32	Q14392	662 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	C1orf228	Q6PIY5	440 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	BLOC1S2	Q6QNY1	142 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	ANKS3	Q6ZW76	656 aa		13.9	□□□□□ -0.18

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