RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 MRGPRX2Q96LB1 330 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 TIGD1Q96MW7 591 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 TMEM175Q9BSA9 504 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 CSRNP2Q9H175 543 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 FZD8Q9H461 694 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 EPHX3Q9H6B9 360 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 NRDE2Q9H7Z3 1164 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 RSAD1Q9HA92 442 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 PRMT7Q9NVM4 692 aaPredicted RBP8.85□□□□□ -0.99
SCN1A-207ENST00000507401 LRWD1Q9UFC0 647 aa8.85□□□□□ -0.99
SCN1A-207ENST00000507401 A0A087WWV3 80 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 C2orf71A6NGG8 1288 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 MEIS3P2A8K0S8 358 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 HIDE1A8MVS5 230 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 CFAP99D6REC4 459 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 CXCL14O95715 111 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 GLP2RO95838 553 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 TUBB4AP04350 444 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 ITGA4P13612 1032 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 ARF4P18085 180 aaPredicted RBP8.84□□□□□ -0.99
SCN1A-207ENST00000507401 WNT7BP56706 349 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 RNASELQ05823 741 aaKnown RBP8.84□□□□□ -0.99
SCN1A-207ENST00000507401 SLC27A1Q6PCB7 646 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 TMEM87AQ8NBN3 555 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 SMG8Q8ND04 991 aaKnown RBP8.84□□□□□ -0.99
SCN1A-207ENST00000507401 ASAP3Q8TDY4 903 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 FAM193BQ96PV7 902 aaPredicted RBP8.84□□□□□ -0.99
SCN1A-207ENST00000507401 POLR3FQ9H1D9 316 aaPredicted RBP8.84□□□□□ -0.99
SCN1A-207ENST00000507401 C2orf40Q9H1Z8 148 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 ENTPD7Q9NQZ7 604 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 EVA1BQ9NVM1 165 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 LIMD1Q9UGP4 676 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 KCNG1Q9UIX4 513 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 FAN1Q9Y2M0 1017 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 GIT1Q9Y2X7 761 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 IPPQ9Y573 584 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 PCDHGC5Q9Y5F6 944 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 ATP6V1DQ9Y5K8 247 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 ZMYM2Q9UBW7 1377 aa8.84□□□□□ -0.99
SCN1A-207ENST00000507401 ARHGEF35A5YM69 484 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 NT5C1B-RDH14C9J2C7 533 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 ACKR2O00590 384 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 ST8SIA5O15466 376 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 USO1O60763 962 aaKnown RBP8.83□□□□□ -1
SCN1A-207ENST00000507401 ZC3H11AO75152 810 aaKnown RBP eCLIP8.83□□□□□ -1
SCN1A-207ENST00000507401 DDHD2O94830 711 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 CAVIN2O95810 425 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 C1RP00736 705 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 CCNYL3P0C7X3 344 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 CTSAP10619 480 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 CCT6AP40227 531 aaKnown RBP8.83□□□□□ -1
SCN1A-207ENST00000507401 PBX3P40426 434 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 PPP2R5AQ15172 486 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 CLUL1Q15846 466 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 TUSC1Q2TAM9 212 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 LONRF3Q496Y0 759 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 TMEM31Q5JXX7 168 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 PLPP4Q5VZY2 271 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 KRT79Q5XKE5 535 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 CDCA2Q69YH5 1023 aaPredicted RBP8.83□□□□□ -1
SCN1A-207ENST00000507401 ANKRD54Q6NXT1 300 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 DTHD1Q6ZMT9 781 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 ZNF771Q7L3S4 317 aaPredicted RBP8.83□□□□□ -1
SCN1A-207ENST00000507401 ZNF280BQ86YH2 543 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 ZBTB8OSQ8IWT0 167 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 CYP4X1Q8N118 509 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 VPS52Q8N1B4 723 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 VN1R2Q8NFZ6 395 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 SUSD6Q92537 303 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 CASP10Q92851 521 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 ZBP1Q9H171 429 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 S1PR5Q9H228 398 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 DNAJB4Q9UDY4 337 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 KIAA1024Q9UPX6 916 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 DNM3Q9UQ16 869 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 SSX2IPQ9Y2D8 614 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 INPP5FQ9Y2H2 1132 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.83□□□□□ -1
SCN1A-207ENST00000507401 PCDHB6Q9Y5E3 794 aa8.83□□□□□ -1
SCN1A-207ENST00000507401 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.83□□□□□ -1
SCN1A-207ENST00000507401 ARL5CA6NH57 179 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 LRRIQ4A6NIV6 560 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 SMTNL1A8MU46 457 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 LOC730098B7Z3J9 87 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 H3BQV1 296 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 KIF2AO00139 706 aaPredicted RBP8.82□□□□□ -1
SCN1A-207ENST00000507401 NRP1O14786 923 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 DCXO43602 365 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 LILRB3O75022 631 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 CLASP2O75122 1294 aaKnown RBP8.82□□□□□ -1
SCN1A-207ENST00000507401 CSPG5O95196 566 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 EFEMP2O95967 443 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 POMCP01189 267 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 GJB2P29033 226 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 NAMPTP43490 491 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 SLC11A1P49279 550 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 AFF1P51825 1210 aaKnown RBP8.82□□□□□ -1
SCN1A-207ENST00000507401 EFNA5P52803 228 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 ITIH3Q06033 890 aa8.82□□□□□ -1
SCN1A-207ENST00000507401 DSC1Q08554 894 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 146.9 ms