RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 PLEKHA5Q9HAU0 1116 aa18.21■□□□□ 0.51
SNCA-209ENST00000506244 CNTN3Q9P232 1028 aa18.21■□□□□ 0.51
SNCA-209ENST00000506244 UBE4BO95155 1302 aa18.21■□□□□ 0.51
SNCA-209ENST00000506244 A0A0B4J269 797 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 EIF3DO15371 548 aaKnown RBP eCLIP18.2■□□□□ 0.5
SNCA-209ENST00000506244 CA8P35219 290 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 NDUFA8P51970 172 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 ERVFC1P60507 584 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 MRPS5P82675 430 aaKnown RBP18.2■□□□□ 0.5
SNCA-209ENST00000506244 PPP2R3AQ06190 1150 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 HYAL1Q12794 435 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 COL19A1Q14993 1142 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 XKR4Q5GH76 650 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 GLRA4Q5JXX5 417 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 TMEM87AQ8NBN3 555 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 BCL7CQ8WUZ0 217 aaPredicted RBP18.2■□□□□ 0.5
SNCA-209ENST00000506244 PPP1R10Q96QC0 940 aaKnown RBP18.2■□□□□ 0.5
SNCA-209ENST00000506244 TSPAN18Q96SJ8 248 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 TLE6Q9H808 572 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 MARCH5Q9NX47 278 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 CHMP5Q9NZZ3 219 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 ADAM28Q9UKQ2 775 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 SSX2IPQ9Y2D8 614 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 STYXL1Q9Y6J8 313 aa18.2■□□□□ 0.5
SNCA-209ENST00000506244 SF3B1O75533 1304 aaKnown RBP eCLIP18.2■□□□□ 0.53e-6■■■■■ 137.9
SNCA-209ENST00000506244 SMIM28A0A1B0GU29 152 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 CASTOR2A6NHX0 329 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 SOD2P04179 222 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 URODP06132 367 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 MYBP10242 640 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 CTSAP10619 480 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 KCNE1P15382 129 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 NRIP1P48552 1158 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 SLC39A4Q6P5W5 647 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 ALKAL1Q6UXT8 129 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 POMGNT1Q8WZA1 660 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 CCDC47Q96A33 483 aaKnown RBP18.19■□□□□ 0.5
SNCA-209ENST00000506244 PAGE5Q96GU1 130 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 HERC2P3Q9BVR0 1158 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 BLZF1Q9H2G9 400 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 RPF1Q9H9Y2 349 aaKnown RBP18.19■□□□□ 0.5
SNCA-209ENST00000506244 PRDM6Q9NQX0 595 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 EXOC1Q9NV70 894 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 CLDND1Q9NY35 253 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 IRAK3Q9Y616 596 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 MYO7AQ13402 2215 aa18.19■□□□□ 0.5
SNCA-209ENST00000506244 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.18■□□□□ 0.5
SNCA-209ENST00000506244 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.18■□□□□ 0.5
SNCA-209ENST00000506244 XPOTO43592 962 aaKnown RBP18.18■□□□□ 0.5
SNCA-209ENST00000506244 TADA2AO75478 443 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 CXCL8P10145 99 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 CASP5P51878 434 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 POU5F1Q01860 360 aaKnown RBP18.18■□□□□ 0.5
SNCA-209ENST00000506244 ELAVL2Q12926 359 aaKnown RBP18.18■□□□□ 0.5
SNCA-209ENST00000506244 CUL4BQ13620 913 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 NAB2Q15742 525 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 DUSP6Q16828 381 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 TPRNQ4KMQ1 711 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 KANK3Q6NY19 840 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 FUT10Q6P4F1 479 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 ADGRD2Q7Z7M1 963 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 CD302Q8IX05 232 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 EFHBQ8N7U6 833 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 MRPL43Q8N983 215 aaKnown RBP18.18■□□□□ 0.5
SNCA-209ENST00000506244 DDX27Q96GQ7 796 aaKnown RBP18.18■□□□□ 0.5
SNCA-209ENST00000506244 HAPLN2Q9GZV7 340 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 AGO2Q9UKV8 859 aaKnown RBP18.18■□□□□ 0.5
SNCA-209ENST00000506244 PCDHGC5Q9Y5F6 944 aa18.18■□□□□ 0.5
SNCA-209ENST00000506244 C2orf71A6NGG8 1288 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 ANKRD63C9JTQ0 380 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 TMEM189-UBE2V1I3L0A0 370 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 KIAA0391O15091 583 aaKnown RBP18.17■□□□□ 0.5
SNCA-209ENST00000506244 FAM189A1O60320 539 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 LDHAP00338 332 aaKnown RBP18.17■□□□□ 0.5
SNCA-209ENST00000506244 GARTP22102 1010 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 KCNA5P22460 613 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 NDUFV1P49821 464 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 CREMQ03060 361 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 EHHADHQ08426 723 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 SLC10A6Q3KNW5 377 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 KIAA1841Q6NSI8 718 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 KRBA2Q6ZNG9 492 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 EP400NLQ6ZTU2 488 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 RBM23Q86U06 439 aaKnown RBP18.17■□□□□ 0.5
SNCA-209ENST00000506244 GRAMD1CQ8IYS0 662 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 EMILIN2Q9BXX0 1053 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 GOLPH3LQ9H4A5 285 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 IGFLR1Q9H665 355 aa18.17■□□□□ 0.5
SNCA-209ENST00000506244 MRPL17Q9NRX2 175 aaKnown RBP18.17■□□□□ 0.5
SNCA-209ENST00000506244 PDCD11Q14690 1871 aaKnown RBP18.16■□□□□ 0.5
SNCA-209ENST00000506244 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.16■□□□□ 0.5
SNCA-209ENST00000506244 TTC26A0AVF1 554 aa18.16■□□□□ 0.5
SNCA-209ENST00000506244 PRPF6O94906 941 aaKnown RBP18.16■□□□□ 0.5
SNCA-209ENST00000506244 ZNF202O95125 648 aa18.16■□□□□ 0.5
SNCA-209ENST00000506244 KIF4AO95239 1232 aa18.16■□□□□ 0.5
SNCA-209ENST00000506244 CXCL14O95715 111 aa18.16■□□□□ 0.5
SNCA-209ENST00000506244 GLUD2P49448 558 aa18.16■□□□□ 0.5
SNCA-209ENST00000506244 KCNA1Q09470 495 aa18.16■□□□□ 0.5
SNCA-209ENST00000506244 PTPN14Q15678 1187 aa18.16■□□□□ 0.5
SNCA-209ENST00000506244 CTC1Q2NKJ3 1217 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms