RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 C1orf112Q9NSG2 853 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 FAM105AQ9NUU6 356 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 MAGEC2Q9UBF1 373 aaPredicted RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 ARMCX3Q9UH62 379 aaPredicted RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 GREB1Q4ZG55 1949 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 A0A1B0GTH6 734 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 TTC26A0AVF1 554 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 C9IYK1 514 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 ENPP3O14638 875 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 MEFVO15553 781 aaPredicted RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 EOMESO95936 686 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 PFKMP08237 780 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 KRT13P13646 458 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 RAG1P15918 1043 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 GTF2H1P32780 548 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 MTIF2P46199 727 aaKnown RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 VAMP7P51809 220 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 UBASH3AP57075 661 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 KCNH2Q12809 1159 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 NR1I3Q14994 352 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 ENOX2Q16206 610 aaKnown RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 TCTN1Q2MV58 587 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 SLC10A6Q3KNW5 377 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 VWA3BQ502W6 1294 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 HSP90AA4PQ58FG1 418 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 CNKSR3Q6P9H4 555 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 SLC24A5Q71RS6 500 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 USP37Q86T82 979 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 ZNF598Q86UK7 904 aaKnown RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 NT5DC4Q86YG4 428 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 CD302Q8IX05 232 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 TMEM192Q8IY95 271 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 THNSL1Q8IYQ7 743 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 RPUSD2Q8IZ73 545 aaKnown RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 CRIPAKQ8N1N5 446 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 TMEM199Q8N511 208 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 PLEKHO2Q8TD55 490 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 LINC01599Q8WXQ3 324 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 SLC35C1Q96A29 364 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 ACAP3Q96P50 834 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 ADAM2Q99965 735 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 CCDC94Q9BW85 323 aaPredicted RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 TRIM6Q9C030 488 aaPredicted RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 NDST4Q9H3R1 872 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 ASB7Q9H672 318 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 ELAC1Q9H777 363 aaKnown RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 RPF1Q9H9Y2 349 aaKnown RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 SNTG2Q9NY99 539 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 RBAKQ9NYW8 714 aaPredicted RBP7.82□□□□□ -1.16
NUP54-204ENST00000506098 DERAQ9Y315 318 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 IPPQ9Y573 584 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 PCDHB2Q9Y5E7 798 aa7.82□□□□□ -1.16
NUP54-204ENST00000506098 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.82□□□□□ -1.16
NUP54-204ENST00000506098 GTPBP10A4D1E9 387 aaKnown RBP7.81□□□□□ -1.16
NUP54-204ENST00000506098 CCDC85CA6NKD9 419 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 LRRIQ3A6PVS8 624 aaPredicted RBP7.81□□□□□ -1.16
NUP54-204ENST00000506098 LGALS16A8MUM7 142 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 LACTBL1A8MY62 500 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 INPPL1O15357 1258 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 P4HA2O15460 535 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 CBFA2T2O43439 604 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 STX10O60499 249 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 SERPINC1P01008 464 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 C4BPAP04003 597 aaKnown RBP7.81□□□□□ -1.16
NUP54-204ENST00000506098 TPM2P07951 284 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 CXCL8P10145 99 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 HARSP12081 509 aaKnown RBP7.81□□□□□ -1.16
NUP54-204ENST00000506098 ATF7P17544 494 aaPredicted RBP7.81□□□□□ -1.16
NUP54-204ENST00000506098 PBX1P40424 430 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 AP3M2P53677 418 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 WNT7BP56706 349 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 DLG4P78352 724 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 ZBTB6Q15916 424 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 FILIP1LQ4L180 1135 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 SEZ6Q53EL9 994 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 C15orf39Q6ZRI6 1047 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 ECHDC2Q86YB7 292 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 WDR49Q8IV35 697 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 TNS4Q8IZW8 715 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 ZNF516Q92618 1163 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 PGBD4Q96DM1 585 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 SNX27Q96L92 541 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 CGRRF1Q99675 332 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 VPS16Q9H269 839 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 NXF3Q9H4D5 531 aaKnown RBP7.81□□□□□ -1.16
NUP54-204ENST00000506098 PDE11AQ9HCR9 933 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 IL23AQ9NPF7 189 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 UBN1Q9NPG3 1134 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 TOPORSQ9NS56 1045 aaPredicted RBP7.81□□□□□ -1.16
NUP54-204ENST00000506098 IFNKQ9P0W0 207 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 CNTN3Q9P232 1028 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 GIT1Q9Y2X7 761 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 COQ4Q9Y3A0 265 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 DENND4CQ5VZ89 1909 aa7.81□□□□□ -1.16
NUP54-204ENST00000506098 ABHD14A-ACY1A0A1B0GW23 586 aa7.8□□□□□ -1.16
NUP54-204ENST00000506098 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.8□□□□□ -1.16
NUP54-204ENST00000506098 A0A1W2PQC6 194 aa7.8□□□□□ -1.16
NUP54-204ENST00000506098 SPDYE4A6NLX3 237 aa7.8□□□□□ -1.16
NUP54-204ENST00000506098 TEX33O43247 280 aa7.8□□□□□ -1.16
NUP54-204ENST00000506098 EVI5O60447 810 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms