RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 CASTOR2A6NHX0 329 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 PROB1E7EW31 1015 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 F8W810 466 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 RECQL4O94761 1208 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 SPATA31D3P0C874 917 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 UBA7P41226 1012 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 ELAVL2Q12926 359 aaKnown RBP13.13□□□□□ -0.31
MED28-203ENST00000503945 STRN3Q13033 797 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 FAM171A1Q5VUB5 890 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 EEF1DP3Q658K8 133 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 ASTLQ6HA08 431 aaPredicted RBP13.13□□□□□ -0.31
MED28-203ENST00000503945 DCLRE1AQ6PJP8 1040 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 C15orf39Q6ZRI6 1047 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 SPATA31D4Q6ZUB0 917 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 OTOP3Q7RTS5 596 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 ASCL5Q7RTU5 278 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 CEP57Q86XR8 500 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 SYT2Q8N9I0 419 aaPredicted RBP13.13□□□□□ -0.31
MED28-203ENST00000503945 B3GALT6Q96L58 329 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 AK8Q96MA6 479 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 ACO2Q99798 780 aaKnown RBP13.13□□□□□ -0.31
MED28-203ENST00000503945 TTPALQ9BTX7 342 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 RUSC1Q9BVN2 902 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 MRPL4Q9BYD3 311 aaKnown RBP13.13□□□□□ -0.31
MED28-203ENST00000503945 MAN1C1Q9NR34 630 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 KCND2Q9NZV8 630 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 FNIP2Q9P278 1114 aa13.13□□□□□ -0.31
MED28-203ENST00000503945 SF3B1O75533 1304 aaKnown RBP eCLIP13.13□□□□□ -0.318e-9■■■■■ 155.1
MED28-203ENST00000503945 CFAP54Q96N23 3096 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 PTGESO14684 152 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 SLC26A4O43511 780 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 TRAPPC3O43617 180 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 BMP15O95972 392 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 PLA2G4BP0C869 781 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 PDCP20941 246 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 GUCY2CP25092 1073 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 RAD51AP2Q09MP3 1159 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 HYIQ5T013 277 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 PDXDC1Q6P996 788 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 KCNK18Q7Z418 384 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 BRAPQ7Z569 592 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 TDRD5Q8NAT2 981 aaKnown RBP13.12□□□□□ -0.31
MED28-203ENST00000503945 CMASQ8NFW8 434 aaPredicted RBP13.12□□□□□ -0.31
MED28-203ENST00000503945 CALML4Q96GE6 196 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 ACAP3Q96P50 834 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 PAAF1Q9BRP4 392 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 CCDC94Q9BW85 323 aaPredicted RBP13.12□□□□□ -0.31
MED28-203ENST00000503945 PIDD1Q9HB75 910 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 PTPRHQ9HD43 1115 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 TOPORSQ9NS56 1045 aaPredicted RBP13.12□□□□□ -0.31
MED28-203ENST00000503945 DENND4AQ7Z401 1863 aa13.12□□□□□ -0.31
MED28-203ENST00000503945 SMIM28A0A1B0GU29 152 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 H0YCG3 227 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 SLC16A4O15374 487 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 TGM5O43548 720 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 B3GAT3O94766 335 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 MYBP10242 640 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 PLS3P13797 630 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 OSTNP61366 133 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 LILRA6Q6PI73 481 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 CCDC149Q6ZUS6 474 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 GLYCTKQ8IVS8 523 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 DAW1Q8N136 415 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 SPIRE2Q8WWL2 714 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 STAMQ92783 540 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 DDX27Q96GQ7 796 aaKnown RBP13.11□□□□□ -0.31
MED28-203ENST00000503945 UROC1Q96N76 676 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 PNMA5Q96PV4 448 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 TARS2Q9BW92 718 aaKnown RBP13.11□□□□□ -0.31
MED28-203ENST00000503945 SLC38A7Q9NVC3 462 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 LARSQ9P2J5 1176 aaKnown RBP13.11□□□□□ -0.31
MED28-203ENST00000503945 ARHGAP28Q9P2N2 729 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 CACNG4Q9UBN1 327 aa13.11□□□□□ -0.31
MED28-203ENST00000503945 MYO15AQ9UKN7 3530 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 PI15O43692 258 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 EDN1P05305 212 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 MCF2P10911 925 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 NPR3P17342 541 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 RPL17P18621 184 aaKnown RBP13.1□□□□□ -0.31
MED28-203ENST00000503945 NBL1P41271 181 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 GRM5P41594 1212 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 CLCN5P51795 746 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 SLC12A3P55017 1021 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 PRSS55Q6UWB4 352 aaPredicted RBP13.1□□□□□ -0.31
MED28-203ENST00000503945 ALKAL1Q6UXT8 129 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 RASSF8Q8NHQ8 419 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 LNX1Q8TBB1 728 aaPredicted RBP13.1□□□□□ -0.31
MED28-203ENST00000503945 HASPINQ8TF76 798 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 SMG7Q92540 1137 aaKnown RBP13.1□□□□□ -0.31
MED28-203ENST00000503945 RHOBTB2Q9BYZ6 727 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 CXCL16Q9H2A7 254 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 MFSD1Q9H3U5 465 aa13.1□□□□□ -0.31
MED28-203ENST00000503945 WDR6Q9NNW5 1121 aaKnown RBP13.1□□□□□ -0.31
MED28-203ENST00000503945 RIF1Q5UIP0 2472 aaKnown RBP13.1□□□□□ -0.31
MED28-203ENST00000503945 PRR23AA6NEV1 266 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 CLDN3O15551 220 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 TOM1L1O75674 476 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 RFPL2O75678 378 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 KIF4AO95239 1232 aa13.09□□□□□ -0.31
MED28-203ENST00000503945 DMDP11532 3685 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms