RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 NCOA4Q13772 614 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 NBPF9Q3BBW0 867 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 METTL23Q86XA0 190 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 C4orf32Q8N8J7 132 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 RBBP8NLQ8NC74 664 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 ZSWIM1Q9BR11 485 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 NGRNQ9NPE2 291 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 CCDC160A6NGH7 325 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 ANKRD65E5RJM6 399 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 CYP3A4P08684 503 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 VEGFAP15692 232 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 CA8P35219 290 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 PBX1P40424 430 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 CENPCQ03188 943 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 GRIK5Q16478 980 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 FOXR2Q6PJQ5 311 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 KDM7AQ6ZMT4 941 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 CATSPER4Q7RTX7 472 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 RNF169Q8NCN4 708 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 MRIQ9BWK5 157 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 GOLPH3Q9H4A6 298 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 NUB1Q9Y5A7 615 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 FAM86B1E9PN63 330 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 HLA-DRAP01903 254 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 FAM86B2P0C5J1 330 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 IRAK1P51617 712 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 SGSM1Q2NKQ1 1148 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 MIIPQ5JXC2 388 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 RNF149Q8NC42 400 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 CHST13Q8NET6 341 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 SLC5A5Q92911 643 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 SLC10A4Q96EP9 437 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 SCYL1Q96KG9 808 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 FOXP3Q9BZS1 431 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 KCNMB3Q9NPA1 279 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 CYP3A7-CYP3A51PA0A087WV96 503 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 MEFVO15553 781 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 CYP3A7P24462 503 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 HSD17B3P37058 310 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ACAD10Q6JQN1 1059 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ATP11CQ8NB49 1132 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 BEST2Q8NFU1 509 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 GRAMD1AQ96CP6 724 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 TGS1Q96RS0 853 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 CELF4Q9BZC1 486 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ROPN1BQ9BZX4 212 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ROPN1Q9HAT0 212 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 TTC7AQ9ULT0 858 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ATP8B3O60423 1300 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 TCHHQ07283 1943 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ASB14A6NK59 587 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 FOXN3O00409 490 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 GIPC1O14908 333 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 LSP1P33241 339 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 FNTAP49354 379 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ARSEP51690 589 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 PDIA2Q13087 525 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 PIGHQ14442 188 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 FBXO41Q8TF61 875 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 CCT8L2Q96SF2 557 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 NACA2Q9H009 215 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 FBXO28Q9NVF7 368 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 SENP1Q9P0U3 644 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 WDR35Q9P2L0 1181 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ROR1Q01973 937 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ZBED8Q8IZ13 594 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 AGO4Q9HCK5 861 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 KCNQ5Q9NR82 932 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 PHRF1Q9P1Y6 1649 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 H3BQF6 201 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 ZC3H11AO75152 810 aaKnown RBP eCLIP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 SDC4P31431 198 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 SLC15A2Q16348 729 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 SEPT1Q8WYJ6 367 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 CCDC97Q96F63 343 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 TMEM117Q9H0C3 514 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 IPO11Q9UI26 975 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 GMNNO75496 209 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 GZMAP12544 262 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 COILP38432 576 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 CDR2Q01850 454 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 DDR1Q08345 913 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 NIPA1Q7RTP0 329 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 KCNK18Q7Z418 384 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 C4orf19Q8IY42 314 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 SCYL3Q8IZE3 742 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 MTMR8Q96EF0 704 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 PPP1R12CQ9BZL4 782 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 FRMPD4Q14CM0 1322 aa11.42□□□□□ -0.58
LIMCH1-205ENST00000503057 OTOP1Q7RTM1 612 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 DDX42Q86XP3 938 aaKnown RBP eCLIP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 OR2W6PQ8NHA6 318 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 ATG4CQ96DT6 458 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 ARHGEF37A1IGU5 675 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 WNT7AO00755 349 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 COPEO14579 308 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 ATMINO43313 823 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 ZBTB7AO95365 584 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 OATP04181 439 aa11.41□□□□□ -0.58
LIMCH1-205ENST00000503057 CHN1P15882 459 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms