RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 HTRA4P83105 476 aaPredicted RBP12.94□□□□□ -0.34
CUX1-210ENST00000497815 RNASELQ05823 741 aaKnown RBP12.94□□□□□ -0.34
CUX1-210ENST00000497815 PPP2R3AQ06190 1150 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 EDRF1Q3B7T1 1238 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 ANO6Q4KMQ2 910 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 TTI2Q6NXR4 508 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 SLC9A9Q8IVB4 645 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 CSGALNACT2Q8N6G5 542 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 ZNF689Q96CS4 500 aaPredicted RBP12.94□□□□□ -0.34
CUX1-210ENST00000497815 DUSP9Q99956 384 aaKnown RBP12.94□□□□□ -0.34
CUX1-210ENST00000497815 KIAA1586Q9HCI6 787 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 TBC1D13Q9NVG8 400 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 DMAC2Q9NW81 257 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 MIOSQ9NXC5 875 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 FRMD4BQ9Y2L6 1034 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 PTGESO14684 152 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 CETN3O15182 167 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 AKAP3O75969 853 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 WNT7BP56706 349 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 FKBP3Q00688 224 aaKnown RBP12.93□□□□□ -0.34
CUX1-210ENST00000497815 NFIL3Q16649 462 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 TPD52L1Q16890 204 aaPredicted RBP12.93□□□□□ -0.34
CUX1-210ENST00000497815 SPOUT1Q5T280 376 aaKnown RBP12.93□□□□□ -0.34
CUX1-210ENST00000497815 BRSK2Q8IWQ3 736 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 CMTR2Q8IYT2 770 aaKnown RBP12.93□□□□□ -0.34
CUX1-210ENST00000497815 LRRC43Q8N309 656 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 FIBCD1Q8N539 461 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 GSTCDQ8NEC7 633 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 CCDC127Q96BQ5 260 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 MED15Q96RN5 788 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 PBX4Q9BYU1 374 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 RC3H2Q9HBD1 1191 aaKnown RBP12.93□□□□□ -0.34
CUX1-210ENST00000497815 PDE11AQ9HCR9 933 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 MSRAQ9UJ68 235 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 PLAGL2Q9UPG8 496 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 YBX2Q9Y2T7 364 aaKnown RBP12.93□□□□□ -0.34
CUX1-210ENST00000497815 PCDHA11Q9Y5I1 949 aa12.93□□□□□ -0.34
CUX1-210ENST00000497815 MRPL42Q9Y6G3 142 aaKnown RBP12.93□□□□□ -0.34
CUX1-210ENST00000497815 SMIM28A0A1B0GU29 152 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 TTC26A0AVF1 554 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 THP07101 528 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 CA3P07451 260 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 NFICP08651 508 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 DLATP10515 647 aaKnown RBP12.92□□□□□ -0.34
CUX1-210ENST00000497815 ERCC5P28715 1186 aaPredicted RBP12.92□□□□□ -0.34
CUX1-210ENST00000497815 PSMC2P35998 433 aaKnown RBP12.92□□□□□ -0.34
CUX1-210ENST00000497815 TTC3P53804 2025 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 CYP24A1Q07973 514 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 MYBPC2Q14324 1141 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 JADE1Q6IE81 842 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 ALKAL1Q6UXT8 129 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 LRRC55Q6ZSA7 311 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 ZNF280BQ86YH2 543 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 FAM186BQ8IYM0 893 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 C18orf25Q96B23 403 aaPredicted RBP12.92□□□□□ -0.34
CUX1-210ENST00000497815 KIF12Q96FN5 646 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 FAM84AQ96KN4 292 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 FBXL18Q96ME1 805 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 ZMAT2Q96NC0 199 aaKnown RBP12.92□□□□□ -0.34
CUX1-210ENST00000497815 FAM193BQ96PV7 902 aaPredicted RBP12.92□□□□□ -0.34
CUX1-210ENST00000497815 FUCA2Q9BTY2 467 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 SRRTQ9BXP5 876 aaKnown RBP12.92□□□□□ -0.34
CUX1-210ENST00000497815 MRPL9Q9BYD2 267 aaKnown RBP12.92□□□□□ -0.34
CUX1-210ENST00000497815 NKX2-4Q9H2Z4 354 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 PLEKHA5Q9HAU0 1116 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 CNTN3Q9P232 1028 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 KANSL3Q9P2N6 904 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 CACNG4Q9UBN1 327 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 COL4A6Q14031 1691 aa12.92□□□□□ -0.34
CUX1-210ENST00000497815 A0A1W2PPC1 479 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 CASTOR2A6NHX0 329 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 B4GALT3O60512 393 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 ZC3H11AO75152 810 aaKnown RBP eCLIP12.91□□□□□ -0.343e-6■■■■□ 25.7
CUX1-210ENST00000497815 DDHD2O94830 711 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 ARHGEF15O94989 841 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 IL18RAPO95256 599 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 EPB41P11171 864 aaKnown RBP12.91□□□□□ -0.34
CUX1-210ENST00000497815 PBX3P40426 434 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 TFAMQ00059 246 aaKnown RBP12.91□□□□□ -0.34
CUX1-210ENST00000497815 GRIK3Q13003 919 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 HSP90AA2PQ14568 343 aaPredicted RBP12.91□□□□□ -0.34
CUX1-210ENST00000497815 TMEM132DQ14C87 1099 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 RAB30Q15771 203 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 CCDC40Q4G0X9 1142 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 HSP90AA4PQ58FG1 418 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 XKR4Q5GH76 650 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 LMBRD2Q68DH5 695 aaPredicted RBP12.91□□□□□ -0.34
CUX1-210ENST00000497815 CREBRFQ8IUR6 639 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 CD302Q8IX05 232 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 TMEM130Q8N3G9 435 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 TMEM174Q8WUU8 243 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 RABGGTAQ92696 567 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 MFSD14AQ96MC6 490 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 POP1Q99575 1024 aaKnown RBP12.91□□□□□ -0.34
CUX1-210ENST00000497815 NAT10Q9H0A0 1025 aaKnown RBP12.91□□□□□ -0.34
CUX1-210ENST00000497815 GOLGA2P5Q9HBQ8 144 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 DNAJB4Q9UDY4 337 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 TUBGCP4Q9UGJ1 667 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 MTUS1Q9ULD2 1270 aa12.91□□□□□ -0.34
CUX1-210ENST00000497815 PDE4DIPQ5VU43 2346 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms