RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 PTK6Q13882 451 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 NKX1-1Q15270 411 aaPredicted RBP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 FAM47AQ5JRC9 791 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 TRABD2AQ86V40 505 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 KIAA0825Q8IV33 1275 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 GLYCTKQ8IVS8 523 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 ZNF713Q8N859 430 aaPredicted RBP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 HELBQ8NG08 1087 aaPredicted RBP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 ZCRB1Q8TBF4 217 aaKnown RBP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 TRAIPQ9BWF2 469 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 KANSL2Q9H9L4 492 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 SSU72Q9NP77 194 aaKnown RBP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 TIMMDC1Q9NPL8 285 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 GCNT4Q9P109 453 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 ANKFY1Q9P2R3 1169 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 SMCO2A6NFE2 343 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 STRNO43815 780 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 CALUO43852 315 aaPredicted RBP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 MTA2O94776 668 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 ZCCHC18P0CG32 403 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 IDO1P14902 403 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 SMARCA1P28370 1054 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 BCAMP50895 628 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 XIAPP98170 497 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 SIX1Q15475 284 aaPredicted RBP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 TMEM63BQ5T3F8 832 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 ADGRG6Q86SQ4 1221 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 LARGE2Q8N3Y3 721 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 GRK7Q8WTQ7 553 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 FAM163AQ96GL9 167 aaPredicted RBP13.82□□□□□ -0.2
VEGFA-215ENST00000497139 SLX1AQ9BQ83 275 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 PLVAPQ9BX97 442 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 GPAMQ9HCL2 828 aa13.82□□□□□ -0.2
VEGFA-215ENST00000497139 ZNF804BA4D1E1 1349 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 TMEM221A6NGB7 291 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 PDXKO00764 312 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 CPA3P15088 417 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 IZUMO2Q6UXV1 221 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 BRINP3Q76B58 766 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 KCNK18Q7Z418 384 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 NET1Q7Z628 596 aaPredicted RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 MTDHQ86UE4 582 aaKnown RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 ZDHHC14Q8IZN3 488 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 REXO1Q8N1G1 1221 aaKnown RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 ZBTB8BQ8NAP8 495 aaPredicted RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 ARHGEF26Q96DR7 871 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 ITGB1BP2Q9UKP3 347 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 COL5A2P05997 1499 aaPredicted RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 HNRNPRO43390 633 aaKnown RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 CYTH3O43739 400 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 AP2B1P63010 937 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 KRT17Q04695 432 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 RASA2Q15283 850 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 TRMT5Q32P41 509 aaKnown RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 C6orf163Q5TEZ5 329 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 SYNE4Q8N205 404 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 DGCR14Q96DF8 476 aaKnown RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 FNBP1Q96RU3 617 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 PCDH18Q9HCL0 1135 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 METTL5Q9NRN9 209 aaKnown RBP13.81□□□□□ -0.2
VEGFA-215ENST00000497139 HSFX1Q9UBD0 423 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 COG5Q9UP83 839 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 TOGARAM1Q9Y4F4 1720 aa13.81□□□□□ -0.2
VEGFA-215ENST00000497139 ABCB4P21439 1286 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 USH1GQ495M9 461 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 HERC4Q5GLZ8 1057 aaPredicted RBP13.8□□□□□ -0.2
VEGFA-215ENST00000497139 CCDC62Q6P9F0 684 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 RNF207Q6ZRF8 634 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 OTOAQ7RTW8 1153 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 ZNF554Q86TJ5 538 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 PDCD7Q8N8D1 485 aaKnown RBP13.8□□□□□ -0.2
VEGFA-215ENST00000497139 CD101Q93033 1021 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 POLR3CQ9BUI4 534 aaPredicted RBP13.8□□□□□ -0.2
VEGFA-215ENST00000497139 CRNKL1Q9BZJ0 848 aaKnown RBP13.8□□□□□ -0.2
VEGFA-215ENST00000497139 THAP2Q9H0W7 228 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 PRDM11Q9NQV5 511 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 ETNK2Q9NVF9 386 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 NDE1Q9NXR1 346 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 AJAP1Q9UKB5 411 aaPredicted RBP13.8□□□□□ -0.2
VEGFA-215ENST00000497139 PAIP2BQ9ULR5 123 aaKnown RBP13.8□□□□□ -0.2
VEGFA-215ENST00000497139 PTPN22Q9Y2R2 807 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 KAT6BQ8WYB5 2073 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 AP1G1O43747 822 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 ANPEPP15144 967 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 TNFAIP3P21580 790 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 RFX1P22670 979 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 CHKAP35790 457 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 SLC35G1Q2M3R5 365 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 CERKLQ49MI3 558 aaPredicted RBP13.8□□□□□ -0.2
VEGFA-215ENST00000497139 TBC1D9BQ66K14 1250 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 RSPH1Q8WYR4 309 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 HAUS1Q96CS2 278 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 OSBPL8Q9BZF1 889 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 SLCO1B3Q9NPD5 702 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 TBCCD1Q9NVR7 557 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 ASIC3Q9UHC3 531 aa13.8□□□□□ -0.2
VEGFA-215ENST00000497139 TRMT112Q9UI30 125 aaKnown RBP13.8□□□□□ -0.2
VEGFA-215ENST00000497139 CETPP11597 493 aa13.79□□□□□ -0.2
VEGFA-215ENST00000497139 NEK3P51956 506 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms