RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	IP6K2	Q9UHH9	426 aa		5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	SAP30BP	Q9UHR5	308 aa	Known RBP	5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	MSRA	Q9UJ68	235 aa		5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	PALD1	Q9ULE6	856 aa		5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	COG5	Q9UP83	839 aa		5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	ST14	Q9Y5Y6	855 aa		5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	MAP1B	P46821	2468 aa	Known RBP	5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	CEP250	Q9BV73	2442 aa		5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	TANC1	Q9C0D5	1861 aa		5.07	□□□□□ -1.6
VPS52-222	ENST00000495981	USP24	Q9UPU5	2620 aa		5.07	□□□□□ -1.6
VPS52-222	ENST00000495981		A0A1W2PQ45	241 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981		A0A1W2PQY0	241 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	VSTM5	A8MXK1	200 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	KBTBD13	C9JR72	458 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981		F8W735	103 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	STXBP3	O00186	592 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	WNT9A	O14904	365 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	AURKA	O14965	403 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	DCX	O43602	365 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	BCAR3	O75815	825 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	LDHA	P00338	332 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	GH2	P01242	217 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	HOXC6	P09630	235 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	RAB6A	P20340	208 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	MAPK4	P31152	587 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	CYP2C18	P33260	490 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	SHMT1	P34896	483 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	GRIK1	P39086	918 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	IL2	P60568	153 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	DYNLL1	P63167	89 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	GABPA	Q06546	454 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	GALE	Q14376	348 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	ODF1	Q14990	250 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	PCBP2	Q15366	365 aa	Known RBP eCLIP	5.06	□□□□□ -1.6	4e-10	■■■■□ 19.6
VPS52-222	ENST00000495981	RAB30	Q15771	203 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	GFOD2	Q3B7J2	385 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	NAA16	Q6N069	864 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	CXorf57	Q6NSI4	855 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	CRTC3	Q6UUV7	619 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	LYPD4	Q6UWN0	246 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	RSPO2	Q6UXX9	243 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	FAM214B	Q7L5A3	538 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	OTOP2	Q7RTS6	562 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	OVCH1	Q7RTY7	1134 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	ANKRD33	Q7Z3H0	272 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	DDX53	Q86TM3	631 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	DTWD2	Q8NBA8	298 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	CLRN3	Q8NCR9	226 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	ARRDC4	Q8NCT1	418 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	CHTF18	Q8WVB6	975 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	IL17RA	Q96F46	866 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	MPHOSPH6	Q99547	160 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	RIOK1	Q9BRS2	568 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	CELF4	Q9BZC1	486 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	KIAA1683	Q9H0B3	1180 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	MRPL18	Q9H0U6	180 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	PRDM16	Q9HAZ2	1276 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	GPR27	Q9NS67	375 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	CHST7	Q9NS84	486 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	H2AFY2	Q9P0M6	372 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	BTBD7	Q9P203	1132 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	HDAC5	Q9UQL6	1122 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	LUC7L2	Q9Y383	392 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	SF3B6	Q9Y3B4	125 aa	Known RBP	5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	COMMD10	Q9Y6G5	202 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	ASPM	Q8IZT6	3477 aa		5.06	□□□□□ -1.6
VPS52-222	ENST00000495981	COL4A4	P53420	1690 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	ZNF292	O60281	2723 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	GBF1	Q92538	1859 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	ZBED9	Q6R2W3	1325 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	TCRBV5S4A2T	A0A5A2	114 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	MYADML2	A6NDP7	307 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	C19orf81	C9J6K1	198 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	FAM229A	H3BQW9	127 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	SEPT4	O43236	478 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	MT-CO1	P00395	513 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	CA3	P07451	260 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	LDHC	P07864	332 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	CELA2B	P08218	269 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	MYBL2	P10244	700 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	ALAD	P13716	330 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	IFNGR1	P15260	489 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	CDK7	P50613	346 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	ATP13A4	Q4VNC1	1196 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	C4orf46	Q504U0	113 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	TMEM177	Q53S58	311 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	KIAA1755	Q5JYT7	1200 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	TTC39A	Q5SRH9	613 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	ANKRD34A	Q69YU3	496 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	IQSEC1	Q6DN90	963 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	CEP85	Q6P2H3	762 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	FDX2	Q6P4F2	183 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	IGF2-AS	Q6U949	168 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	LINC00114	Q6XXX2	140 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981		Q6ZS46	218 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	MTDH	Q86UE4	582 aa	Known RBP	5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	CLEC10A	Q8IUN9	316 aa		5.05	□□□□□ -1.6
VPS52-222	ENST00000495981	IFNL3	Q8IZI9	196 aa		5.05	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms