RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	LILRA6	Q6PI73	481 aa		12.82	□□□□□ -0.36
VTI1A-208	ENST00000494728	ALYREF	Q86V81	257 aa	Known RBP	12.82	□□□□□ -0.36
VTI1A-208	ENST00000494728	PPP1R10	Q96QC0	940 aa	Known RBP	12.82	□□□□□ -0.36
VTI1A-208	ENST00000494728	MYADM	Q96S97	322 aa		12.82	□□□□□ -0.36
VTI1A-208	ENST00000494728	PLIN2	Q99541	437 aa		12.82	□□□□□ -0.36
VTI1A-208	ENST00000494728	ARHGAP28	Q9P2N2	729 aa		12.82	□□□□□ -0.36
VTI1A-208	ENST00000494728	CLUH	O75153	1309 aa		12.82	□□□□□ -0.36
VTI1A-208	ENST00000494728	SF3B1	O75533	1304 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
VTI1A-208	ENST00000494728	CCDC195	A0A1B0GUA6	201 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	SFI1	A8K8P3	1242 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728		I3L4J1	428 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	NARS	O43776	548 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	ST18	O60284	1047 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	NR1I2	O75469	434 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	TH	P07101	528 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	EFNA5	P52803	228 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	OSTN	P61366	133 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	ZRSR1	Q15695	479 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	DCAF4L1	Q3SXM0	396 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	FAM171A1	Q5VUB5	890 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	DTHD1	Q6ZMT9	781 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	C1orf186	Q6ZWK4	172 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	SUGP1	Q8IWZ8	645 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	ST13P5	Q8NFI4	369 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	LNX1	Q8TBB1	728 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	RSAD2	Q8WXG1	361 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	IFT74	Q96LB3	600 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	TBC1D32	Q96NH3	1257 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	ACO2	Q99798	780 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	CLSTN3	Q9BQT9	956 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	ADPGK	Q9BRR6	497 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	TARS2	Q9BW92	718 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	KCNH6	Q9H252	994 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	PTPRH	Q9HD43	1115 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	FNIP2	Q9P278	1114 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	FBXW11	Q9UKB1	542 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	TNFSF13B	Q9Y275	285 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	FAM186A	A6NE01	2351 aa		12.81	□□□□□ -0.36
VTI1A-208	ENST00000494728	MIA3	Q5JRA6	1907 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	NPHP3-ACAD11	A0A0J9YXS1	232 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	VWA3A	A6NCI4	1184 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	CCDC169	A6NNP5	214 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	LAD1	O00515	517 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	SLC16A4	O15374	487 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	TADA2A	O75478	443 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	KCNA4	P22459	653 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	PROZ	P22891	400 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	MRE11	P49959	708 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	CLCNKB	P51801	687 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	SLC12A3	P55017	1021 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	GRIN1	Q05586	938 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	PSMD5	Q16401	504 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	ZNF568	Q3ZCX4	644 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	TMEM119	Q4V9L6	283 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	RILPL1	Q5EBL4	403 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	HYI	Q5T013	277 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	KRT79	Q5XKE5	535 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	CWF19L1	Q69YN2	538 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	RSPO2	Q6UXX9	243 aa	Predicted RBP	12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	UBALD2	Q8IYN6	164 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	TMEM105	Q8N8V8	129 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	PIK3R5	Q8WYR1	880 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	SMG7	Q92540	1137 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	ZBTB45	Q96K62	511 aa	Predicted RBP	12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	ZMAT2	Q96NC0	199 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	TTPAL	Q9BTX7	342 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	RAB34	Q9BZG1	259 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	HAPLN2	Q9GZV7	340 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	NT5C3A	Q9H0P0	336 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	KCNK12	Q9HB15	430 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	WDR6	Q9NNW5	1121 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	FAM86C1	Q9NVL1	165 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	DNM3	Q9UQ16	869 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728	SSX2IP	Q9Y2D8	614 aa		12.8	□□□□□ -0.36
VTI1A-208	ENST00000494728		K7ERI5	159 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	ABCB7	O75027	752 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	TKT	P29401	623 aa	Known RBP	12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	AVPR2	P30518	371 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	BRCC3	P46736	316 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	NTHL1	P78549	312 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	DMP1	Q13316	513 aa	Predicted RBP	12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	UPP1	Q16831	310 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	SEZ6	Q53EL9	994 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	XKR4	Q5GH76	650 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	OTOP3	Q7RTS5	596 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	CEP57	Q86XR8	500 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	GPR65	Q8IYL9	337 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	SNX27	Q96L92	541 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	RHOBTB2	Q9BYZ6	727 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	KMT5A	Q9NQR1	393 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	DNAH14	Q0VDD8	3507 aa		12.79	□□□□□ -0.36
VTI1A-208	ENST00000494728	SCN1A	P35498	2009 aa		12.78	□□□□□ -0.36
VTI1A-208	ENST00000494728	SMIM28	A0A1B0GU29	152 aa		12.78	□□□□□ -0.36
VTI1A-208	ENST00000494728	ZMYND10	O75800	440 aa		12.78	□□□□□ -0.36
VTI1A-208	ENST00000494728	HARS	P12081	509 aa	Known RBP	12.78	□□□□□ -0.36
VTI1A-208	ENST00000494728	FGFR3	P22607	806 aa		12.78	□□□□□ -0.36
VTI1A-208	ENST00000494728	GUCY2C	P25092	1073 aa		12.78	□□□□□ -0.36
VTI1A-208	ENST00000494728	GRM5	P41594	1212 aa		12.78	□□□□□ -0.36
VTI1A-208	ENST00000494728	ARSH	Q5FYA8	562 aa		12.78	□□□□□ -0.36

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