RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 DNM2P50570 870 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 GPC3P51654 580 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 IGBP1P78318 339 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 FAM189BP81408 668 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 CYP4A11Q02928 519 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 DRP2Q13474 957 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 MXD4Q14582 209 aaPredicted RBP7.47□□□□□ -1.21
VPS52-219ENST00000493379 LPIN1Q14693 890 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 TCTN1Q2MV58 587 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 CNKSR3Q6P9H4 555 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 TSHZ1Q6ZSZ6 1077 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 KCNK18Q7Z418 384 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 ZNF410Q86VK4 478 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 DCLK2Q8N568 766 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 MEIOBQ8N635 442 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 DBF4BQ8NFT6 615 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 SLC7A3Q8WY07 619 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 ZBTB10Q96DT7 871 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 ASIC4Q96FT7 647 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 CITED4Q96RK1 184 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 TIPINQ9BVW5 301 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 FTOQ9C0B1 505 aaKnown RBP eCLIP7.47□□□□□ -1.21
VPS52-219ENST00000493379 CSRNP2Q9H175 543 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 MTIF3Q9H2K0 278 aaKnown RBP7.47□□□□□ -1.21
VPS52-219ENST00000493379 AGO3Q9H9G7 860 aaKnown RBP7.47□□□□□ -1.21
VPS52-219ENST00000493379 IFT122Q9HBG6 1241 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 BLOC1S4Q9NUP1 217 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 KCND2Q9NZV8 630 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 MTUS1Q9ULD2 1270 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 DNM3Q9UQ16 869 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 ATP6V1DQ9Y5K8 247 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 TRPV2Q9Y5S1 764 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 CDY2AQ9Y6F7 541 aa7.47□□□□□ -1.21
VPS52-219ENST00000493379 SMG1Q96Q15 3661 aaKnown RBP7.47□□□□□ -1.21
VPS52-219ENST00000493379 TRIP12Q14669 1992 aaPredicted RBP7.47□□□□□ -1.21
VPS52-219ENST00000493379 CEP295Q9C0D2 2601 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 PP2D1A8MPX8 630 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 CUTAO60888 179 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 ADRB1P08588 477 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 DARSP14868 501 aaKnown RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 GUCY2CP25092 1073 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 MARCKSP29966 332 aaPredicted RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 CLCN3P51790 818 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 SLC12A3P55017 1021 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 NLRP11P59045 1033 aaKnown RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 CHMP4BP1P59074 171 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 PTENP60484 403 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 TAGLNQ01995 201 aaKnown RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 DNM1Q05193 864 aaKnown RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 DSC3Q14574 896 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 CLUL1Q15846 466 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 MTERF2Q49AM1 385 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 NAALADL2Q58DX5 795 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 XKR9Q5GH70 373 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 ODR4Q5SWX8 454 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 PLA2G4FQ68DD2 849 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 ADALQ6DHV7 355 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 RINT1Q6NUQ1 792 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 CNNM4Q6P4Q7 775 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 CLEC17AQ6ZS10 378 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 USP49Q70CQ1 688 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 RTN4RL1Q86UN2 441 aaPredicted RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 MCPH1Q8NEM0 835 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 KCNG4Q8TDN1 519 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 RHBDD1Q8TEB9 315 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 SNX29Q8TEQ0 813 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 PIGOQ8TEQ8 1089 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 LRRC15Q8TF66 581 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 TMEM40Q8WWA1 233 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 TCP11Q8WWU5 503 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 PRPF31Q8WWY3 499 aaKnown RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 EPSTI1Q96J88 318 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 FTHL17Q9BXU8 183 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 INO80BQ9C086 356 aaPredicted RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 C17orf75Q9HAS0 396 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 ERVK-5Q9HDB9 667 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 DDX19AQ9NUU7 478 aaKnown RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 SUCLA2Q9P2R7 463 aaPredicted RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 WDR81Q562E7 1941 aa7.46□□□□□ -1.22
VPS52-219ENST00000493379 MYH9P35579 1960 aaKnown RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 TEP1Q99973 2627 aaKnown RBP7.46□□□□□ -1.22
VPS52-219ENST00000493379 PTPRSQ13332 1948 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 DCDC2BA2VCK2 349 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 LCHNA4D1U4 455 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 E9PMD0 336 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 M0QZ92 97 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 ENPP3O14638 875 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 GPR182O15218 404 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 ACTN1P12814 892 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 GPC1P35052 558 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 UBA7P41226 1012 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 ZNF131P52739 623 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 ATXN1P54253 815 aaKnown RBP7.45□□□□□ -1.22
VPS52-219ENST00000493379 LAMTOR4Q0VGL1 99 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 MAPK7Q13164 816 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 IKBKEQ14164 716 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 EMC2Q15006 297 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 FAM187BQ17R55 369 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 C11orf91Q3C1V1 193 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms