RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PKNOX2Q96KN3 472 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 JPH2Q9BR39 696 aaPredicted RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 KIFC3Q9BVG8 833 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 CCDC113Q9H0I3 377 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 CARD9Q9H257 536 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 DMGDHQ9UI17 866 aaKnown RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 AMFRQ9UKV5 643 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 KIAA0100Q14667 2235 aaKnown RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 RBM47A0AV96 593 aaKnown RBP11.56□□□□□ -0.56
USP4-214ENST00000491791 GOLGA8IPA6NC78 632 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 GOLGA8JA6NMD2 632 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 K7ERI5 159 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 PGRMC1O00264 195 aaKnown RBP11.56□□□□□ -0.56
USP4-214ENST00000491791 DDX3YO15523 660 aaKnown RBP11.56□□□□□ -0.56
USP4-214ENST00000491791 BUB1BO60566 1050 aaPredicted RBP11.56□□□□□ -0.56
USP4-214ENST00000491791 CYP11B1P15538 503 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 CXCR5P32302 372 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 LIG4P49917 911 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 EPHB4P54760 987 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 MXD4Q14582 209 aaPredicted RBP11.56□□□□□ -0.56
USP4-214ENST00000491791 ENOX2Q16206 610 aaKnown RBP11.56□□□□□ -0.56
USP4-214ENST00000491791 NOP9Q86U38 636 aaKnown RBP11.56□□□□□ -0.56
USP4-214ENST00000491791 NCAPG2Q86XI2 1143 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 ABRAQ8N0Z2 381 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 FAM71BQ8TC56 605 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 ZNF516Q92618 1163 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 SAAL1Q96ER3 474 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 OTUD5Q96G74 571 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 PCDHB18PQ96TA0 734 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 GPR20Q99678 358 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 PTPN18Q99952 460 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 NFKBIZQ9BYH8 718 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 SLITRK6Q9H5Y7 841 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 UVRAGQ9P2Y5 699 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 GTF3C4Q9UKN8 822 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 AGO2Q9UKV8 859 aaKnown RBP11.56□□□□□ -0.56
USP4-214ENST00000491791 HTTP42858 3142 aa11.56□□□□□ -0.56
USP4-214ENST00000491791 ASB14A6NK59 587 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 KCNK3O14649 394 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 ASAP2O43150 1006 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 FAM189A1O60320 539 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 GGPS1O95749 300 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 FTLP02792 175 aaPredicted RBP11.55□□□□□ -0.56
USP4-214ENST00000491791 CETPP11597 493 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 FMO1Q01740 532 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 SNAPC2Q13487 334 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 KCTD2Q14681 263 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 C8orf74Q6P047 294 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 ZNF467Q7Z7K2 595 aaPredicted RBP11.55□□□□□ -0.56
USP4-214ENST00000491791 PALB2Q86YC2 1186 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 GPIHBP1Q8IV16 184 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 RPUSD2Q8IZ73 545 aaKnown RBP11.55□□□□□ -0.56
USP4-214ENST00000491791 DEPTORQ8TB45 409 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 HDAC7Q8WUI4 952 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 SLC20A1Q8WUM9 679 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 CCDC127Q96BQ5 260 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 FAXDC2Q96IV6 333 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 MS4A14Q96JA4 679 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 MS4A4AQ96JQ5 239 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 NAP1L3Q99457 506 aaPredicted RBP11.55□□□□□ -0.56
USP4-214ENST00000491791 HAPLN2Q9GZV7 340 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 C2orf40Q9H1Z8 148 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 TXNRD2Q9NNW7 524 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 AVENQ9NQS1 362 aaPredicted RBP11.55□□□□□ -0.56
USP4-214ENST00000491791 HPCAL4Q9UM19 191 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 COG5Q9UP83 839 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 CNTNAP2Q9UHC6 1331 aa11.55□□□□□ -0.56
USP4-214ENST00000491791 CENPFP49454 3210 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 ZBTB42B2RXF5 422 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 H3BQF6 201 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 ABLIM1O14639 778 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 CYP26A1O43174 497 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 MSCO60682 206 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 LRRN2O75325 713 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 TOM1L1O75674 476 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 SGPL1O95470 568 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 MYBL1P10243 752 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 MYBL2P10244 700 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 ACO1P21399 889 aaKnown RBP11.54□□□□□ -0.56
USP4-214ENST00000491791 PROZP22891 400 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 CTNNA2P26232 953 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 OAS2P29728 719 aaKnown RBP11.54□□□□□ -0.56
USP4-214ENST00000491791 TCF7P36402 384 aaPredicted RBP11.54□□□□□ -0.56
USP4-214ENST00000491791 MKRN4PQ13434 485 aaPredicted RBP11.54□□□□□ -0.56
USP4-214ENST00000491791 CUL1Q13616 776 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 CAPSQ13938 189 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 SURF1Q15526 300 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 Q3C1V9 767 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 ALS2CLQ60I27 953 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 ACAD10Q6JQN1 1059 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 TRIM72Q6ZMU5 477 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 DAAM2Q86T65 1068 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 IFNLR1Q8IU57 520 aaPredicted RBP11.54□□□□□ -0.56
USP4-214ENST00000491791 EFCAB13Q8IY85 973 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 PPM1KQ8N3J5 372 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 UBR7Q8N806 425 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 C1orf131Q8NDD1 294 aaKnown RBP11.54□□□□□ -0.56
USP4-214ENST00000491791 BRI3BPQ8WY22 251 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 KAT5Q92993 513 aa11.54□□□□□ -0.56
USP4-214ENST00000491791 CD101Q93033 1021 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms