RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 EPHX3Q9H6B9 360 aa16.53■□□□□ 0.24
USP39-217ENST00000491659 CACNG4Q9UBN1 327 aa16.53■□□□□ 0.24
USP39-217ENST00000491659 LILRB3O75022 631 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 KIF4AO95239 1232 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 BRD1O95696 1058 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 ALADP13716 330 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 ABCD1P33897 745 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 DDIT3P35638 169 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 NASPP49321 788 aaPredicted RBP16.52■□□□□ 0.24
USP39-217ENST00000491659 CLCN4P51793 760 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 CREMQ03060 361 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 RARS2Q5T160 578 aaKnown RBP16.52■□□□□ 0.24
USP39-217ENST00000491659 RRAGBQ5VZM2 374 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 ELMSAN1Q6PJG2 1045 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 USP49Q70CQ1 688 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 TAS1R1Q7RTX1 841 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 HAUS6Q7Z4H7 955 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 HASPINQ8TF76 798 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 KHSRPQ92945 711 aaKnown RBP eCLIP16.52■□□□□ 0.24
USP39-217ENST00000491659 FBXL18Q96ME1 805 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 UROC1Q96N76 676 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 NECTIN4Q96NY8 510 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 ACAP3Q96P50 834 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 PPP1R10Q96QC0 940 aaKnown RBP16.52■□□□□ 0.24
USP39-217ENST00000491659 PAAF1Q9BRP4 392 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 GPR62Q9BZJ7 368 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 CXCL16Q9H2A7 254 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 ADAM7Q9H2U9 754 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 SFXN1Q9H9B4 322 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.52■□□□□ 0.24
USP39-217ENST00000491659 CHST7Q9NS84 486 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 SLC38A7Q9NVC3 462 aa16.52■□□□□ 0.24
USP39-217ENST00000491659 DENND4AQ7Z401 1863 aa16.52■□□□□ 0.23
USP39-217ENST00000491659 PI4K2BG5E9Z4 385 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 ABLIM1O14639 778 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 HNRNPDLO14979 420 aaKnown RBP16.51■□□□□ 0.23
USP39-217ENST00000491659 DCXO43602 365 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 TRAK2O60296 914 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 MTHFRP42898 656 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 ELAVL2Q12926 359 aaKnown RBP16.51■□□□□ 0.23
USP39-217ENST00000491659 NAB2Q15742 525 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 KIAA0319Q5VV43 1072 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 CCDC73Q6ZRK6 1079 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 GPR65Q8IYL9 337 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 KCNN1Q92952 543 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 B3GALT6Q96L58 329 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 SNX27Q96L92 541 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 RIPOR3Q96MK2 946 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 DPP7Q9UHL4 492 aa16.51■□□□□ 0.23
USP39-217ENST00000491659 C2orf16Q68DN1 1984 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 LOC730098B7Z3J9 87 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 TEX28O15482 410 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 CLDN3O15551 220 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 GLUD1P00367 558 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 STAT6P42226 847 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 LIG4P49917 911 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 FOXD4L5Q5VV16 416 aaPredicted RBP16.5■□□□□ 0.23
USP39-217ENST00000491659 SV2BQ7L1I2 683 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 FOXD4L4Q8WXT5 416 aaPredicted RBP16.5■□□□□ 0.23
USP39-217ENST00000491659 RIN2Q8WYP3 895 aaPredicted RBP16.5■□□□□ 0.23
USP39-217ENST00000491659 ZBTB45Q96K62 511 aaPredicted RBP16.5■□□□□ 0.23
USP39-217ENST00000491659 RPGRIP1Q96KN7 1286 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 RXFP1Q9HBX9 757 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 MAN1C1Q9NR34 630 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 TBX20Q9UMR3 447 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 VWA8A3KMH1 1905 aa16.5■□□□□ 0.23
USP39-217ENST00000491659 MTCL1Q9Y4B5 1905 aaKnown RBP16.5■□□□□ 0.23
USP39-217ENST00000491659 SMIM28A0A1B0GU29 152 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 TMEM189-UBE2V1I3L0A0 370 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 SPTLC2O15270 562 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 PPP6R2O75170 966 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 YEATS4O95619 227 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 F13A1P00488 732 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 ZSCAN22P10073 491 aaPredicted RBP16.49■□□□□ 0.23
USP39-217ENST00000491659 CLCNKBP51801 687 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 MCL1Q07820 350 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 XKR4Q5GH76 650 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 FAM171A1Q5VUB5 890 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 PDXDC1Q6P996 788 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 DYMQ7RTS9 669 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 RNF135Q8IUD6 432 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 C12orf76Q8N812 135 aaPredicted RBP16.49■□□□□ 0.23
USP39-217ENST00000491659 LINC00301Q8NCQ3 95 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 TTPALQ9BTX7 342 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 CNTN3Q9P232 1028 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 FNIP2Q9P278 1114 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 CDH22Q9UJ99 828 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 NR2E1Q9Y466 385 aa16.49■□□□□ 0.23
USP39-217ENST00000491659 B3GAT3O94766 335 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 KCNE1P15382 129 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 PSMD5Q16401 504 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 KYAT1Q16773 422 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 TMEM31Q5JXX7 168 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 RTP2Q5QGT7 225 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 ATAT1Q5SQI0 421 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 DCLRE1AQ6PJP8 1040 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 ALKAL1Q6UXT8 129 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 TMC5Q6UXY8 1006 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 CEP57Q86XR8 500 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 SPRYD3Q8NCJ5 442 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms