RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 BICD1Q96G01 975 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 SNX27Q96L92 541 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 CDCA3Q99618 268 aaPredicted RBP15.23■□□□□ 0.03
SYNE1-226ENST00000488376 HERC2P3Q9BVR0 1158 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 HCFC2Q9Y5Z7 792 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 IRAK3Q9Y616 596 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 ANKRD63C9JTQ0 380 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 TNFRSF10AO00220 468 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 FAM189A1O60320 539 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 SOD2P04179 222 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 CNPP09543 421 aaKnown RBP15.22■□□□□ 0.03
SYNE1-226ENST00000488376 ME1P48163 572 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 GTF2BQ00403 316 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 KCNA1Q09470 495 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 COASYQ13057 564 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 SMAD4Q13485 552 aaKnown RBP15.22■□□□□ 0.03
SYNE1-226ENST00000488376 XKR4Q5GH76 650 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 KIAA0319Q5VV43 1072 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 ANKRD54Q6NXT1 300 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 FUT10Q6P4F1 479 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 CD300LGQ6UXG3 332 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 ZPBP2Q6X784 338 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 TMEM184AQ6ZMB5 413 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 C12orf76Q8N812 135 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-226ENST00000488376 C3orf58Q8NDZ4 430 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 SLC22A17Q8WUG5 538 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 KCNN1Q92952 543 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 C18orf25Q96B23 403 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-226ENST00000488376 DHX58Q96C10 678 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 KLHL5Q96PQ7 755 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 CCDC94Q9BW85 323 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-226ENST00000488376 COLEC11Q9BWP8 271 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 S1PR5Q9H228 398 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 ADAM28Q9UKQ2 775 aa15.22■□□□□ 0.03
SYNE1-226ENST00000488376 USP15Q9Y4E8 981 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-226ENST00000488376 TTC28Q96AY4 2481 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 HNRNPDLO14979 420 aaKnown RBP15.21■□□□□ 0.03
SYNE1-226ENST00000488376 CLDN3O15551 220 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 PPP1R37O75864 691 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 PIGRP01833 764 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 CXCL8P10145 99 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 MYBP10242 640 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 PDIA4P13667 645 aaKnown RBP15.21■□□□□ 0.03
SYNE1-226ENST00000488376 RPL17P18621 184 aaKnown RBP15.21■□□□□ 0.03
SYNE1-226ENST00000488376 CASP1P29466 404 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 LIG4P49917 911 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 CLCNKBP51801 687 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 SPAG1Q07617 926 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 SMAD2Q15796 467 aaKnown RBP15.21■□□□□ 0.03
SYNE1-226ENST00000488376 SLC10A6Q3KNW5 377 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 RTP2Q5QGT7 225 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 ZNF720Q7Z2F6 126 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 MAP4K3Q8IVH8 894 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 GLIS3Q8NEA6 775 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 KCNG4Q8TDN1 519 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 HPS3Q969F9 1004 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 ACAP3Q96P50 834 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 STRA6Q9BX79 667 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 CHST7Q9NS84 486 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 RCOR1Q9UKL0 485 aa15.21■□□□□ 0.03
SYNE1-226ENST00000488376 TDRD15B5MCY1 1934 aaKnown RBP15.21■□□□□ 0.02
SYNE1-226ENST00000488376 CUL9Q8IWT3 2517 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 FRMD3A2A2Y4 597 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 CARNS1A5YM72 827 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 H0YCG3 227 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 I3L4J1 428 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 NR1I2O75469 434 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 TADA2AO75478 443 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 URODP06132 367 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 WEE2P0C1S8 567 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 IDEP14735 1019 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 MATR3P43243 847 aaKnown RBP eCLIP15.2■□□□□ 0.02
SYNE1-226ENST00000488376 GLUD2P49448 558 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 YARSP54577 528 aaKnown RBP15.2■□□□□ 0.02
SYNE1-226ENST00000488376 DSG1Q02413 1049 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 ZP2Q05996 745 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 PUS10Q3MIT2 529 aaKnown RBP15.2■□□□□ 0.02
SYNE1-226ENST00000488376 RESP18Q5W5W9 173 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 PRSS55Q6UWB4 352 aaPredicted RBP15.2■□□□□ 0.02
SYNE1-226ENST00000488376 APBB1IPQ7Z5R6 666 aaPredicted RBP15.2■□□□□ 0.02
SYNE1-226ENST00000488376 LEO1Q8WVC0 666 aaPredicted RBP15.2■□□□□ 0.02
SYNE1-226ENST00000488376 MRPL17Q9NRX2 175 aaKnown RBP15.2■□□□□ 0.02
SYNE1-226ENST00000488376 KBTBD4Q9NVX7 518 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 CNTN3Q9P232 1028 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 TUBGCP4Q9UGJ1 667 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 KCNG1Q9UIX4 513 aa15.2■□□□□ 0.02
SYNE1-226ENST00000488376 C5orf42Q9H799 3197 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.19■□□□□ 0.02
SYNE1-226ENST00000488376 A0A0B4J269 797 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 TEX28O15482 410 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 POLR2DO15514 142 aaKnown RBP15.19■□□□□ 0.02
SYNE1-226ENST00000488376 KCNE1P15382 129 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 CLCN4P51793 760 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 ENOX2Q16206 610 aaKnown RBP15.19■□□□□ 0.02
SYNE1-226ENST00000488376 UPP1Q16831 310 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 GLYCTKQ8IVS8 523 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 GRAMD1CQ8IYS0 662 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 ZSWIM2Q8NEG5 633 aa15.19■□□□□ 0.02
SYNE1-226ENST00000488376 RIN2Q8WYP3 895 aaPredicted RBP15.19■□□□□ 0.02
SYNE1-226ENST00000488376 SUSD6Q92537 303 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms