RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 TOM1O60784 492 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 COQ9O75208 318 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 FGFR1P11362 822 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 IMPDH2P12268 514 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 SMARCA1P28370 1054 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 FMO5P49326 533 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 GPC5P78333 572 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 SPARCL1Q14515 664 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 ZRSR2Q15696 482 aaKnown RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 PDK4Q16654 411 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 OTOAQ7RTW8 1153 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 PPFIBP2Q8ND30 876 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 SLCO2A1Q92959 643 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 C9orf72Q96LT7 481 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 REEP2Q9BRK0 252 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 VCX3BQ9H321 246 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 SYNCQ9H7C4 482 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 VCX3AQ9NNX9 186 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 DNAAF2Q9NVR5 837 aaKnown RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 TFCP2L1Q9NZI6 479 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 STX18Q9P2W9 335 aaKnown RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 ANAPC5Q9UJX4 755 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 MINPP1Q9UNW1 487 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 FRMPD2Q68DX3 1309 aaPredicted RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 TAF1P21675 1872 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 RSPH10B2B2RC85 870 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 MEIS1O00470 390 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 C2CD2LO14523 706 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 PLSCR1O15162 318 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 ATMINO43313 823 aaPredicted RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 CCDC22O60826 627 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 LRRN2O75325 713 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 RSPH10BP0C881 870 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 RPA3P35244 121 aaPredicted RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 NEK3P51956 506 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 STAT4Q14765 748 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 KIF22Q14807 665 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 MYBPC3Q14896 1274 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 CBWD6Q4V339 395 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 SGO2Q562F6 1265 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 CBWD3Q5JTY5 395 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 CBWD5Q5RIA9 395 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 HS2ST1Q7LGA3 356 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 TRABD2AQ86V40 505 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 NCAPG2Q86XI2 1143 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 SYCP3Q8IZU3 236 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 ARHGAP18Q8N392 663 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 ZNF526Q8TF50 670 aaPredicted RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 ZNF184Q99676 751 aaPredicted RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 CCDC77Q9BR77 488 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 PREBQ9HCU5 417 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 NPHS2Q9NP85 383 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 CHST7Q9NS84 486 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 CCDC87Q9NVE4 849 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 ARL8BQ9NVJ2 186 aa11.34□□□□□ -0.59
CCDC171-208ENST00000486641 SAP30BPQ9UHR5 308 aaKnown RBP11.34□□□□□ -0.59
CCDC171-208ENST00000486641 SCN7AQ01118 1682 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 TTC36A6NLP5 189 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 ZSCAN9O15535 394 aaPredicted RBP11.33□□□□□ -0.6
CCDC171-208ENST00000486641 TGFB1I1O43294 461 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 SPATA31D3P0C874 917 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 GCAP28676 217 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 VPS41P49754 854 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 NT5C2P49902 561 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 RTP1P59025 263 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 PABPC4Q13310 644 aaKnown RBP eCLIP11.33□□□□□ -0.6
CCDC171-208ENST00000486641 TCEAL1Q15170 157 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 SLC1A5Q15758 541 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 GSTA3Q16772 222 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 PHLDB3Q6NSJ2 640 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 ZNF746Q6NUN9 644 aaPredicted RBP11.33□□□□□ -0.6
CCDC171-208ENST00000486641 SPATA31D4Q6ZUB0 917 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 KIAA0825Q8IV33 1275 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 FAM186BQ8IYM0 893 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 ATG4AQ8WYN0 398 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 NR1H4Q96RI1 486 aaPredicted RBP11.33□□□□□ -0.6
CCDC171-208ENST00000486641 TUBGCP5Q96RT8 1024 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 DDX43Q9NXZ2 648 aaKnown RBP11.33□□□□□ -0.6
CCDC171-208ENST00000486641 SLC4A7Q9Y6M7 1214 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 WASF2Q9Y6W5 498 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 SPATA31A1Q5TZJ5 1347 aa11.33□□□□□ -0.6
CCDC171-208ENST00000486641 CFAP69A5D8W1 941 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 GYG2O15488 501 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 PRPF4O43172 522 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC171-208ENST00000486641 SPOPO43791 374 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 HNRNPCL1O60812 293 aaKnown RBP11.32□□□□□ -0.6
CCDC171-208ENST00000486641 GCNT3O95395 438 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 NTSR2O95665 410 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 ETS2P15036 469 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 ADCY8P40145 1251 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 RINLQ6ZS11 566 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 CATSPER3Q86XQ3 398 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 RBM12BQ8IXT5 1001 aaKnown RBP11.32□□□□□ -0.6
CCDC171-208ENST00000486641 C4orf33Q8N1A6 199 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 TGFBRAP1Q8WUH2 860 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 PTCD3Q96EY7 689 aaKnown RBP11.32□□□□□ -0.6
CCDC171-208ENST00000486641 EYA3Q99504 573 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 INTS2Q9H0H0 1204 aaKnown RBP11.32□□□□□ -0.6
CCDC171-208ENST00000486641 TRABDQ9H4I3 376 aa11.32□□□□□ -0.6
CCDC171-208ENST00000486641 KANSL3Q9P2N6 904 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms