RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 NCKAP1LP55160 1127 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 ITIH3Q06033 890 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 ELAVL2Q12926 359 aaKnown RBP14.11□□□□□ -0.15
CHMP3-208ENST00000486404 KCNC3Q14003 757 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 SLC39A14Q15043 492 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 USP41Q3LFD5 358 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 ARSHQ5FYA8 562 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 RARS2Q5T160 578 aaKnown RBP14.11□□□□□ -0.15
CHMP3-208ENST00000486404 ZPBP2Q6X784 338 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 CCDC73Q6ZRK6 1079 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 HAUS6Q7Z4H7 955 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 CEP120Q8N960 986 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 NTPCRQ9BSD7 190 aaKnown RBP14.11□□□□□ -0.15
CHMP3-208ENST00000486404 SFXN1Q9H9B4 322 aa14.11□□□□□ -0.15
CHMP3-208ENST00000486404 GLUD1P00367 558 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 ALADP13716 330 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 NASPP49321 788 aaPredicted RBP14.1□□□□□ -0.15
CHMP3-208ENST00000486404 DSG1Q02413 1049 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 SYCE2Q6PIF2 218 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 USP49Q70CQ1 688 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 SPRYD3Q8NCJ5 442 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 LRRC15Q8TF66 581 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 RIN2Q8WYP3 895 aaPredicted RBP14.1□□□□□ -0.15
CHMP3-208ENST00000486404 SUSD6Q92537 303 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 B3GALT6Q96L58 329 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 SNX27Q96L92 541 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 FBXL18Q96ME1 805 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 RIPOR3Q96MK2 946 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 UROC1Q96N76 676 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 NECTIN4Q96NY8 510 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 ACAP3Q96P50 834 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 KLHL5Q96PQ7 755 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 PHF7Q9BWX1 381 aaPredicted RBP14.1□□□□□ -0.15
CHMP3-208ENST00000486404 PTPRHQ9HD43 1115 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 TSHZ2Q9NRE2 1034 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.1□□□□□ -0.15
CHMP3-208ENST00000486404 SLC38A7Q9NVC3 462 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 DPP7Q9UHL4 492 aa14.1□□□□□ -0.15
CHMP3-208ENST00000486404 MORC2Q9Y6X9 1032 aaPredicted RBP14.1□□□□□ -0.15
CHMP3-208ENST00000486404 C19orf67A6NJJ6 358 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 SPTLC2O15270 562 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 CLDN3O15551 220 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 DCXO43602 365 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 TRAK2O60296 914 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 ZSCAN22P10073 491 aaPredicted RBP14.09□□□□□ -0.15
CHMP3-208ENST00000486404 PROZP22891 400 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 SP100P23497 879 aaPredicted RBP14.09□□□□□ -0.15
CHMP3-208ENST00000486404 DDIT3P35638 169 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 MTHFRP42898 656 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 CLCN4P51793 760 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 ZNF131P52739 623 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 FOXD4L6Q3SYB3 417 aaPredicted RBP14.09□□□□□ -0.15
CHMP3-208ENST00000486404 FOXD4L3Q6VB84 417 aaPredicted RBP14.09□□□□□ -0.15
CHMP3-208ENST00000486404 SV2BQ7L1I2 683 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 TAS1R1Q7RTX1 841 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 RNF168Q8IYW5 571 aaPredicted RBP14.09□□□□□ -0.15
CHMP3-208ENST00000486404 SLC22A17Q8WUG5 538 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 RPGRIP1Q96KN7 1286 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 PPP1R10Q96QC0 940 aaKnown RBP14.09□□□□□ -0.15
CHMP3-208ENST00000486404 PAAF1Q9BRP4 392 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 GPR62Q9BZJ7 368 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 S1PR5Q9H228 398 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 ADAM7Q9H2U9 754 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 MAN1C1Q9NR34 630 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 NR2E1Q9Y466 385 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 ANK1P16157 1881 aa14.09□□□□□ -0.15
CHMP3-208ENST00000486404 SMIM28A0A1B0GU29 152 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 TEX28O15482 410 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 BRD1O95696 1058 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 F13A1P00488 732 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 FAM171A1Q5VUB5 890 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 PDXDC1Q6P996 788 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 TMC5Q6UXY8 1006 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 DYMQ7RTS9 669 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 CEP57Q86XR8 500 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 GLYCTKQ8IVS8 523 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 C12orf76Q8N812 135 aaPredicted RBP14.08□□□□□ -0.16
CHMP3-208ENST00000486404 ZBTB45Q96K62 511 aaPredicted RBP14.08□□□□□ -0.16
CHMP3-208ENST00000486404 TTPALQ9BTX7 342 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 CXCL16Q9H2A7 254 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 EPHX3Q9H6B9 360 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 GOLGA2P5Q9HBQ8 144 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 TBX20Q9UMR3 447 aa14.08□□□□□ -0.16
CHMP3-208ENST00000486404 ABLIM1O14639 778 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 TRAPPC3O43617 180 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 B3GAT3O94766 335 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 YEATS4O95619 227 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 WEE2P0C1S8 567 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 GAP43P17677 238 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 CLCNKBP51801 687 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 PPP2R3AQ06190 1150 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 MCL1Q07820 350 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 NAB2Q15742 525 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 PSMD5Q16401 504 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 KYAT1Q16773 422 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 TMEM31Q5JXX7 168 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 RTP2Q5QGT7 225 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 ATAT1Q5SQI0 421 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 KIAA0319Q5VV43 1072 aa14.07□□□□□ -0.16
CHMP3-208ENST00000486404 PRSS55Q6UWB4 352 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms