RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SPG21Q9NZD8 308 aa8.79□□□□□ -1
USP40-216ENST00000485943 KLK14Q9P0G3 267 aa8.79□□□□□ -1
USP40-216ENST00000485943 FAN1Q9Y2M0 1017 aa8.79□□□□□ -1
USP40-216ENST00000485943 MRPL42Q9Y6G3 142 aaKnown RBP8.79□□□□□ -1
USP40-216ENST00000485943 PTPRSQ13332 1948 aa8.79□□□□□ -1
USP40-216ENST00000485943 FNDC1Q4ZHG4 1894 aaPredicted RBP8.79□□□□□ -1
USP40-216ENST00000485943 A0A1B0GVL5 298 aa8.78□□□□□ -1
USP40-216ENST00000485943 H3BNC9 293 aa8.78□□□□□ -1
USP40-216ENST00000485943 KINO60870 393 aaKnown RBP8.78□□□□□ -1
USP40-216ENST00000485943 ZNF623O75123 536 aa8.78□□□□□ -1
USP40-216ENST00000485943 TOM1L1O75674 476 aa8.78□□□□□ -1
USP40-216ENST00000485943 FGF18O76093 207 aa8.78□□□□□ -1
USP40-216ENST00000485943 PFKFB1P16118 471 aa8.78□□□□□ -1
USP40-216ENST00000485943 JUNDP17535 347 aa8.78□□□□□ -1
USP40-216ENST00000485943 AKAP5P24588 427 aa8.78□□□□□ -1
USP40-216ENST00000485943 PPP2R3AQ06190 1150 aa8.78□□□□□ -1
USP40-216ENST00000485943 GRIK3Q13003 919 aa8.78□□□□□ -1
USP40-216ENST00000485943 GIT2Q14161 759 aa8.78□□□□□ -1
USP40-216ENST00000485943 DSC3Q14574 896 aa8.78□□□□□ -1
USP40-216ENST00000485943 FAM187BQ17R55 369 aa8.78□□□□□ -1
USP40-216ENST00000485943 KCNT2Q6UVM3 1135 aa8.78□□□□□ -1
USP40-216ENST00000485943 USP49Q70CQ1 688 aa8.78□□□□□ -1
USP40-216ENST00000485943 HS2ST1Q7LGA3 356 aa8.78□□□□□ -1
USP40-216ENST00000485943 SFR1Q86XK3 245 aa8.78□□□□□ -1
USP40-216ENST00000485943 KLHL23Q8NBE8 558 aa8.78□□□□□ -1
USP40-216ENST00000485943 COLGALT1Q8NBJ5 622 aa8.78□□□□□ -1
USP40-216ENST00000485943 POMGNT1Q8WZA1 660 aa8.78□□□□□ -1
USP40-216ENST00000485943 GBP4Q96PP9 640 aa8.78□□□□□ -1
USP40-216ENST00000485943 GAD1Q99259 594 aa8.78□□□□□ -1
USP40-216ENST00000485943 TARS2Q9BW92 718 aaKnown RBP8.78□□□□□ -1
USP40-216ENST00000485943 EIF2AQ9BY44 585 aaKnown RBP8.78□□□□□ -1
USP40-216ENST00000485943 FZD8Q9H461 694 aa8.78□□□□□ -1
USP40-216ENST00000485943 NXF3Q9H4D5 531 aaKnown RBP8.78□□□□□ -1
USP40-216ENST00000485943 PDZD7Q9H5P4 517 aa8.78□□□□□ -1
USP40-216ENST00000485943 TMEM206Q9H813 350 aa8.78□□□□□ -1
USP40-216ENST00000485943 RPF1Q9H9Y2 349 aaKnown RBP8.78□□□□□ -1
USP40-216ENST00000485943 ALG13Q9NP73 1137 aaKnown RBP8.78□□□□□ -1
USP40-216ENST00000485943 TLR9Q9NR96 1032 aa8.78□□□□□ -1
USP40-216ENST00000485943 SLC38A7Q9NVC3 462 aa8.78□□□□□ -1
USP40-216ENST00000485943 SNTG2Q9NY99 539 aa8.78□□□□□ -1
USP40-216ENST00000485943 LMCD1Q9NZU5 365 aa8.78□□□□□ -1
USP40-216ENST00000485943 RCOR1Q9UKL0 485 aa8.78□□□□□ -1
USP40-216ENST00000485943 FAM50BQ9Y247 325 aa8.78□□□□□ -1
USP40-216ENST00000485943 TNFSF13BQ9Y275 285 aa8.78□□□□□ -1
USP40-216ENST00000485943 SSX2IPQ9Y2D8 614 aa8.78□□□□□ -1
USP40-216ENST00000485943 PRG3Q9Y2Y8 225 aaPredicted RBP8.78□□□□□ -1
USP40-216ENST00000485943 HES2Q9Y543 173 aa8.78□□□□□ -1
USP40-216ENST00000485943 NUB1Q9Y5A7 615 aa8.78□□□□□ -1
USP40-216ENST00000485943 MORC2Q9Y6X9 1032 aaPredicted RBP8.78□□□□□ -1
USP40-216ENST00000485943 CITO14578 2027 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 A0A1B0GUA9 196 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 ARL5CA6NH57 179 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 NT5C1B-RDH14C9J2C7 533 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 TRAPPC3O43617 180 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 NCK2O43639 380 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 TADA2AO75478 443 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 RECQL4O94761 1208 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 SMC2O95347 1197 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 LDHAP00338 332 aaKnown RBP8.77□□□□□ -1.01
USP40-216ENST00000485943 URODP06132 367 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 MCF2P10911 925 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 CMA1P23946 247 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 NDUFV1P49821 464 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 SCNN1GP51170 649 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 BCAR1P56945 870 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 FAM189BP81408 668 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 UBE3AQ05086 875 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 MSS51Q4VC12 460 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 PLPP4Q5VZY2 271 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 RESP18Q5W5W9 173 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 PDE12Q6L8Q7 609 aaKnown RBP8.77□□□□□ -1.01
USP40-216ENST00000485943 ARMCX5Q6P1M9 558 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 CNNM4Q6P4Q7 775 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 SHC4Q6S5L8 630 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 ZPBP2Q6X784 338 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 FAM160A2Q8N612 972 aaPredicted RBP8.77□□□□□ -1.01
USP40-216ENST00000485943 POF1BQ8WVV4 589 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 P2RX5Q93086 422 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 ZNF689Q96CS4 500 aaPredicted RBP8.77□□□□□ -1.01
USP40-216ENST00000485943 KCTD12Q96CX2 325 aaKnown RBP8.77□□□□□ -1.01
USP40-216ENST00000485943 HVCN1Q96D96 273 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 MRPL38Q96DV4 380 aaKnown RBP8.77□□□□□ -1.01
USP40-216ENST00000485943 GUCD1Q96NT3 240 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 CASD1Q96PB1 797 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 TRAIPQ9BWF2 469 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 EMILIN2Q9BXX0 1053 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 NSUN3Q9H649 340 aaKnown RBP8.77□□□□□ -1.01
USP40-216ENST00000485943 TLE6Q9H808 572 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 BLOC1S4Q9NUP1 217 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 TBC1D13Q9NVG8 400 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 ARHGAP28Q9P2N2 729 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 THEGQ9P2T0 379 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 TBX20Q9UMR3 447 aa8.77□□□□□ -1.01
USP40-216ENST00000485943 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.77□□□□□ -1.01
USP40-216ENST00000485943 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.76□□□□□ -1.01
USP40-216ENST00000485943 MYMKA6NI61 221 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 OFD1O75665 1012 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 MYL1P05976 194 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 SLFN14P0C7P3 912 aa8.76□□□□□ -1.01
USP40-216ENST00000485943 MAPTP10636 758 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms