RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MALLQ13021 153 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 NOMO1Q15155 1222 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 CCDC142Q17RM4 750 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 BEAN1Q3B7T3 259 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 MUM1L1Q5H9M0 696 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 LY6G5CQ5SRR4 150 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 KCNV1Q6PIU1 500 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 PDZD4Q76G19 769 aaPredicted RBP4.5□□□□□ -1.69
VPS50-216ENST00000484954 GLCCI1Q86VQ1 547 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 MYEOVQ96EZ4 313 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 PAWRQ96IZ0 340 aaKnown RBP4.5□□□□□ -1.69
VPS50-216ENST00000484954 PRRX2Q99811 253 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 ADAM2Q99965 735 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 MYOCQ99972 504 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 RBM12Q9NTZ6 932 aaKnown RBP4.5□□□□□ -1.69
VPS50-216ENST00000484954 SLC23A1Q9UHI7 598 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 USP15Q9Y4E8 981 aaPredicted RBP4.5□□□□□ -1.69
VPS50-216ENST00000484954 COL4A3Q01955 1670 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 TMEM200CA6NKL6 621 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 RNASET2O00584 256 aaKnown RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 PRSS23O95084 383 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 GSPT1P15170 499 aaKnown RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 IARSP41252 1262 aaKnown RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 CLRN1P58418 232 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 ATXN7L2Q5T6C5 722 aaPredicted RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 RNF219Q5W0B1 726 aaPredicted RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 CBARPQ8N350 705 aaPredicted RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 ZGPATQ8N5A5 531 aaKnown RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 CNTD1Q8N815 330 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 BEND2Q8NDZ0 799 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 CPEB3Q8NE35 698 aaKnown RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 DPF2Q92785 391 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 DCLRE1CQ96SD1 692 aaKnown RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 UHRF1Q96T88 793 aaPredicted RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 MRI1Q9BV20 369 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 WDR11Q9BZH6 1224 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 AJAP1Q9UKB5 411 aaPredicted RBP4.49□□□□□ -1.69
VPS50-216ENST00000484954 CLCA2Q9UQC9 943 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 PRKAB1Q9Y478 270 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 GPR45Q9Y5Y3 372 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 ACTL7AQ9Y615 435 aa4.49□□□□□ -1.69
VPS50-216ENST00000484954 MARCH11A6NNE9 402 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 K7ESF4 209 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 PJA2O43164 708 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 CLSTN1O94985 981 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 AMY1AP04745 511 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 ELANEP08246 267 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 RAP2AP10114 183 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 RBP3P10745 1247 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 CPEP16870 476 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 AGXTP21549 392 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 SLC6A2P23975 617 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 ZEB1P37275 1124 aaPredicted RBP4.48□□□□□ -1.69
VPS50-216ENST00000484954 PER3P56645 1201 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 MRPS21P82921 87 aaKnown RBP4.48□□□□□ -1.69
VPS50-216ENST00000484954 KLF1Q13351 362 aaPredicted RBP4.48□□□□□ -1.69
VPS50-216ENST00000484954 PTPAQ15257 358 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 ANO4Q32M45 955 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 INAVAQ3KP66 663 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 AGAP9Q5VTM2 703 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 MED25Q71SY5 747 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 PPM1NQ8N819 430 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 ZFP28Q8NHY6 868 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 RAB24Q969Q5 203 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 ZSWIM1Q9BR11 485 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 ADI1Q9BV57 179 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 SERHL2Q9H4I8 314 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 ZNF277Q9NRM2 450 aaPredicted RBP4.48□□□□□ -1.69
VPS50-216ENST00000484954 DNM3Q9UQ16 869 aa4.48□□□□□ -1.69
VPS50-216ENST00000484954 TMEM191CA6NGB0 347 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 GCP02774 474 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 SNRPA1P09661 255 aaKnown RBP4.47□□□□□ -1.69
VPS50-216ENST00000484954 MGAT1P26572 445 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 MGAT2Q10469 447 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 FAPQ12884 760 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 SP140Q13342 867 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 TP53BP2Q13625 1128 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 Q6YL49 198 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 PLXDC1Q8IUK5 500 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 OR56A1Q8NGH5 318 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 CCHCR1Q8TD31 782 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 ASB10Q8WXI3 467 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 SENP6Q9GZR1 1112 aaPredicted RBP4.47□□□□□ -1.69
VPS50-216ENST00000484954 LANCL2Q9NS86 450 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 KLHL11Q9NVR0 708 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 FBXO34Q9NWN3 711 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 SLC5A4Q9NY91 659 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 TUBD1Q9UJT1 453 aa4.47□□□□□ -1.69
VPS50-216ENST00000484954 RUVBL1Q9Y265 456 aaKnown RBP4.47□□□□□ -1.69
VPS50-216ENST00000484954 AATKQ6ZMQ8 1374 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 SBNO2Q9Y2G9 1366 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 GAGE12BA1L429 117 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 GAGE12HA6NDE8 117 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 SPDEFO95238 335 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 MT-CO1P00395 513 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 DDX6P26196 483 aaKnown RBP eCLIP4.46□□□□□ -1.7
VPS50-216ENST00000484954 CDKN1CP49918 316 aaPredicted RBP4.46□□□□□ -1.7
VPS50-216ENST00000484954 SLC5A3P53794 718 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 RESTQ13127 1097 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 MTM1Q13496 603 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms