RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 RTN4Q9NQC3 1192 aaKnown RBP8.96□□□□□ -0.98
SYNE1-225ENST00000481502 SLC38A7Q9NVC3 462 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 TMEM161AQ9NX61 479 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 RBAKQ9NYW8 714 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-225ENST00000481502 CNTN3Q9P232 1028 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 KANSL3Q9P2N6 904 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 FBXL5Q9UKA1 691 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 PCDHB2Q9Y5E7 798 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 NR2E3Q9Y5X4 410 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 TRIM43BA6NCK2 446 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 LGALS16A8MUM7 142 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 ENPP3O14638 875 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 EVI5O60447 810 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 CSDE1O75534 798 aaKnown RBP8.95□□□□□ -0.98
SYNE1-225ENST00000481502 NPTXRO95502 500 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 FAM163BP0C2L3 166 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 ITGA4P13612 1032 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 RFX1P22670 979 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 CDC25BP30305 580 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 ACOT2P49753 483 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 COPB1P53618 953 aaKnown RBP8.95□□□□□ -0.98
SYNE1-225ENST00000481502 KCNH2Q12809 1159 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 ENOX2Q16206 610 aaKnown RBP8.95□□□□□ -0.98
SYNE1-225ENST00000481502 FIGNQ5HY92 759 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 ZNF598Q86UK7 904 aaKnown RBP8.95□□□□□ -0.98
SYNE1-225ENST00000481502 ECHDC2Q86YB7 292 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 CBWD2Q8IUF1 395 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 THNSL1Q8IYQ7 743 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 TNS4Q8IZW8 715 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 SMG8Q8ND04 991 aaKnown RBP8.95□□□□□ -0.98
SYNE1-225ENST00000481502 TAF4BQ92750 862 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 TRIM43Q96BQ3 446 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-225ENST00000481502 CGRRF1Q99675 332 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 TRIM5Q9C035 493 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 TMX1Q9H3N1 280 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 IL23AQ9NPF7 189 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 IPPQ9Y573 584 aa8.95□□□□□ -0.98
SYNE1-225ENST00000481502 TISP43B9A030 160 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 STAU1O95793 577 aaKnown RBP8.94□□□□□ -0.98
SYNE1-225ENST00000481502 ATP1A3P13637 1013 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 TNNI1P19237 187 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 FGFR4P22455 802 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 ATICP31939 592 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 CYP2C18P33260 490 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 FMO5P49326 533 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 TRIM14Q14142 442 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 ZBTB6Q15916 424 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 SLC10A6Q3KNW5 377 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 ZACNQ401N2 412 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 MIIPQ5JXC2 388 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 PSRC1Q6PGN9 363 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-225ENST00000481502 C15orf39Q6ZRI6 1047 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 ZBTB33Q86T24 672 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 RTN4RL1Q86UN2 441 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-225ENST00000481502 NPAS4Q8IUM7 802 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 CRIPAKQ8N1N5 446 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 RDH13Q8NBN7 331 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 PHOSPHO2Q8TCD6 241 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 JAKMIP2Q96AA8 810 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 SAAL1Q96ER3 474 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 ANKRD36BP1Q96IX9 119 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 SNX27Q96L92 541 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 EIF2AQ9BY44 585 aaKnown RBP8.94□□□□□ -0.98
SYNE1-225ENST00000481502 PPP1R12CQ9BZL4 782 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 MTIF3Q9H2K0 278 aaKnown RBP8.94□□□□□ -0.98
SYNE1-225ENST00000481502 VRTNQ9H8Y1 702 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 PLCB1Q9NQ66 1216 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 INTS13Q9NVM9 706 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 ITGA11Q9UKX5 1188 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 UBQLN1Q9UMX0 589 aaKnown RBP8.94□□□□□ -0.98
SYNE1-225ENST00000481502 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE1-225ENST00000481502 ITIH6Q6UXX5 1313 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 CENPFP49454 3210 aa8.94□□□□□ -0.98
SYNE1-225ENST00000481502 GOLGA8IPA6NC78 632 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 CCDC85CA6NKD9 419 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 GOLGA8JA6NMD2 632 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 LRRIQ3A6PVS8 624 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-225ENST00000481502 LACTBL1A8MY62 500 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 RECQL4O94761 1208 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 TNNC2P02585 160 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 C4BPAP04003 597 aaKnown RBP8.93□□□□□ -0.98
SYNE1-225ENST00000481502 THP07101 528 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 TMEM191BP0C7N4 346 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 LRPAP1P30533 357 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 RPL9P32969 192 aaKnown RBP8.93□□□□□ -0.98
SYNE1-225ENST00000481502 PNPLA4P41247 253 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 MXI1P50539 228 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 CCL23P55773 120 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 FPGSQ05932 587 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 TCERG1LQ5VWI1 586 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 GLB1LQ6UWU2 654 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 GBP6Q6ZN66 633 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 SV2AQ7L0J3 742 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 ENOSF1Q7L5Y1 443 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 TTC39CQ8N584 583 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 CCDC150Q8NCX0 1101 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 FBXL13Q8NEE6 735 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 BEST2Q8NFU1 509 aa8.93□□□□□ -0.98
SYNE1-225ENST00000481502 DDX27Q96GQ7 796 aaKnown RBP8.93□□□□□ -0.98
SYNE1-225ENST00000481502 SCLYQ96I15 445 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms