RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ADGRA3Q8IWK6 1321 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 DCCP43146 1447 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 CFAP69A5D8W1 941 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 SMAPO00193 183 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 EYA4O95677 639 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 PTPN4P29074 926 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 OVGP1Q12889 678 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 PICALMQ13492 652 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 KPNB1Q14974 876 aaKnown RBP20■□□□□ 0.79
CCDC88B-207ENST00000479965 SF3B3Q15393 1217 aaKnown RBP20■□□□□ 0.79
CCDC88B-207ENST00000479965 CYP1B1Q16678 543 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 ZNF568Q3ZCX4 644 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 ARHGAP22Q7Z5H3 698 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 ROBO3Q96MS0 1386 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 EXOC3O60645 756 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 BCRP11274 1271 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 RBM5P52756 815 aaKnown RBP eCLIP20■□□□□ 0.79
CCDC88B-207ENST00000479965 ASPRV1Q53RT3 343 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 HS2ST1Q7LGA3 356 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 NLRP9Q7RTR0 991 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 ZNF653Q96CK0 615 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20■□□□□ 0.79
CCDC88B-207ENST00000479965 KIAA1551Q9HCM1 1747 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 SNED1Q8TER0 1413 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 GAS8O95995 478 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 HHATQ5VTY9 493 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 C4orf50Q6ZRC1 276 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 DRAXINQ8NBI3 349 aaPredicted RBP20■□□□□ 0.79
CCDC88B-207ENST00000479965 KAT5Q92993 513 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 STMN2Q93045 179 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 MCUR1Q96AQ8 359 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 SUGT1Q9Y2Z0 365 aa20■□□□□ 0.79
CCDC88B-207ENST00000479965 ASMTLO95671 621 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 SPATA31C1P0DKV0 1188 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 RPA3P35244 121 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 MOGSQ13724 837 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 DPP8Q6V1X1 898 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 PPFIBP2Q8ND30 876 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 NRG4Q8WWG1 115 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 FAM136AQ96C01 138 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 BORCS6Q96GS4 357 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 MIPEPQ99797 713 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 BTG4Q9NY30 223 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 SGPL1O95470 568 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 CLK2P49760 499 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 GSTO1P78417 241 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 LRRC23Q53EV4 343 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 RHBDF2Q6PJF5 856 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 VPS52Q8N1B4 723 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 ZFAND2BQ8WV99 257 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 PCDHB18PQ96TA0 734 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 ANO3Q9BYT9 981 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 TRABDQ9H4I3 376 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 LRRC19Q9H756 370 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 GRID1Q9ULK0 1009 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 RABGAP1Q9Y3P9 1069 aa19.99■□□□□ 0.79
CCDC88B-207ENST00000479965 LAMB1P07942 1786 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 A0A0G2JND7 137 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 LMNAP02545 664 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 TBC1D25Q3MII6 688 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 ZNF365Q70YC5 407 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 ARHGEF19Q8IW93 802 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 SYCP3Q8IZU3 236 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 WDR66Q8TBY9 1149 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 TRAIPQ9BWF2 469 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 MTMR4Q9NYA4 1195 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 MYO3BQ8WXR4 1341 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 NHSL1Q5SYE7 1610 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 RRM1P23921 792 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 SLC5A5Q92911 643 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 SMC6Q96SB8 1091 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 CADM1Q9BY67 442 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 PCIF1Q9H4Z3 704 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 ZBTB39O15060 712 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 CHMP2AO43633 222 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 EDF1O60869 148 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 GJC1P36383 396 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 USP4Q13107 963 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 KIF22Q14807 665 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 PKN2Q16513 984 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 ACSBG2Q5FVE4 666 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 LRRC74BQ6ZQY2 392 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 GSTA5Q7RTV2 222 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 SLFN12Q8IYM2 578 aa19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 ALG13Q9NP73 1137 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-207ENST00000479965 GYG2O15488 501 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 AKR1B1P15121 316 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 RPA1P27694 616 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 CERKLQ49MI3 558 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 C10orf82Q8WW14 230 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 MAIP1Q8WWC4 291 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 ANKRD2Q9GZV1 360 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 ZBTB12Q9Y330 459 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 FRMPD4Q14CM0 1322 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 TBX10O75333 385 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 LDHCP07864 332 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 NT5C2P49902 561 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 DLG4P78352 724 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 ZBTB16Q05516 673 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 ITPK1Q13572 414 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms