RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 SPOPLQ6IQ16 392 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 C11orf63Q6NUN7 778 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 RNPC3Q96LT9 517 aaKnown RBP13.98□□□□□ -0.17
SEC13-216ENST00000479868 MSTO1Q9BUK6 570 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 CARD9Q9H257 536 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 FAM204AQ9H8W3 233 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 C1orf112Q9NSG2 853 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 AMACRQ9UHK6 382 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 A0A0B4J269 797 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 ZC3H11AO75152 810 aaKnown RBP eCLIP13.98□□□□□ -0.17
SEC13-216ENST00000479868 MAFO75444 373 aaPredicted RBP13.98□□□□□ -0.17
SEC13-216ENST00000479868 VNN1O95497 513 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 SLC25A27O95847 323 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 HLA-DRAP01903 254 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 YBX3P16989 372 aaKnown RBP eCLIP13.98□□□□□ -0.178e-12■■□□□ 14.4
SEC13-216ENST00000479868 MARCKSL1P49006 195 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 GUCY2FP51841 1108 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 NNTQ13423 1086 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 SEZ6Q53EL9 994 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 C9orf131Q5VYM1 1079 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 PRPF31Q8WWY3 499 aaKnown RBP13.98□□□□□ -0.17
SEC13-216ENST00000479868 KRT35Q92764 455 aa13.98□□□□□ -0.17
SEC13-216ENST00000479868 RBAKQ9NYW8 714 aaPredicted RBP13.98□□□□□ -0.17
SEC13-216ENST00000479868 KIAA0391O15091 583 aaKnown RBP13.97□□□□□ -0.17
SEC13-216ENST00000479868 ADCY3O60266 1144 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 ECHS1P30084 290 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 NF2P35240 595 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 LMAN1P49257 510 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 PPIL2Q13356 520 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 BIRC3Q13489 604 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 MESDQ14696 234 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 SLFN12LQ6IEE8 588 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 AADACL2Q6P093 401 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 ADAT2Q7Z6V5 191 aaKnown RBP13.97□□□□□ -0.17
SEC13-216ENST00000479868 OPTNQ96CV9 577 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 BTBD6Q96KE9 485 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 GPR20Q99678 358 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 NUP85Q9BW27 656 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 DIS3Q9Y2L1 958 aaKnown RBP13.97□□□□□ -0.17
SEC13-216ENST00000479868 ADGRA2Q96PE1 1338 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 BHMG1C9JSJ3 638 aaPredicted RBP13.97□□□□□ -0.17
SEC13-216ENST00000479868 MTA2O94776 668 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 CYP1A2P05177 515 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 HARSP12081 509 aaKnown RBP13.97□□□□□ -0.17
SEC13-216ENST00000479868 COMTP21964 271 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 SCP2P22307 547 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 PIK3CAP42336 1068 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 TMEM63BQ5T3F8 832 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 ENOSF1Q7L5Y1 443 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 DDX42Q86XP3 938 aaKnown RBP eCLIP13.97□□□□□ -0.17
SEC13-216ENST00000479868 CPNE8Q86YQ8 564 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 ZNF564Q8TBZ8 553 aaPredicted RBP13.97□□□□□ -0.17
SEC13-216ENST00000479868 GLG1Q92896 1179 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 ZNF653Q96CK0 615 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 CELF4Q9BZC1 486 aaKnown RBP13.97□□□□□ -0.17
SEC13-216ENST00000479868 TAF1DQ9H5J8 278 aaPredicted RBP13.97□□□□□ -0.17
SEC13-216ENST00000479868 AZI2Q9H6S1 392 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 TMEM134Q9H6X4 195 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 PSD3Q9NYI0 1048 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 GTF3C4Q9UKN8 822 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 TRPC6Q9Y210 931 aa13.97□□□□□ -0.17
SEC13-216ENST00000479868 DNAJC25-GNG10A0A024R161 153 aa13.96□□□□□ -0.17
SEC13-216ENST00000479868 ZBTB42B2RXF5 422 aa13.96□□□□□ -0.17
SEC13-216ENST00000479868 COPB2P35606 906 aa13.96□□□□□ -0.17
SEC13-216ENST00000479868 MKRN4PQ13434 485 aaPredicted RBP13.96□□□□□ -0.17
SEC13-216ENST00000479868 WDR44Q5JSH3 913 aa13.96□□□□□ -0.17
SEC13-216ENST00000479868 SCARA3Q6AZY7 606 aa13.96□□□□□ -0.17
SEC13-216ENST00000479868 FBXO16Q8IX29 292 aaPredicted RBP13.96□□□□□ -0.17
SEC13-216ENST00000479868 SLITRK6Q9H5Y7 841 aa13.96□□□□□ -0.17
SEC13-216ENST00000479868 APOBEC3GQ9HC16 384 aaKnown RBP13.96□□□□□ -0.17
SEC13-216ENST00000479868 ERVK-5Q9HDB9 667 aa13.96□□□□□ -0.17
SEC13-216ENST00000479868 CNTNAP2Q9UHC6 1331 aa13.96□□□□□ -0.17
SEC13-216ENST00000479868 TTI1O43156 1089 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 LDHAP00338 332 aaKnown RBP13.96□□□□□ -0.18
SEC13-216ENST00000479868 POU5F1Q01860 360 aaKnown RBP13.96□□□□□ -0.18
SEC13-216ENST00000479868 CLEC16AQ2KHT3 1053 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 CELF3Q5SZQ8 465 aaKnown RBP13.96□□□□□ -0.18
SEC13-216ENST00000479868 WDR78Q5VTH9 848 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 ACAD10Q6JQN1 1059 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 GPAT2Q6NUI2 795 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 OR5B17Q8NGF7 314 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 MMP19Q99542 508 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 SH3GL2Q99962 352 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 ZSWIM1Q9BR11 485 aa13.96□□□□□ -0.18
SEC13-216ENST00000479868 MIF4GDA9UHW6 222 aaKnown RBP13.95□□□□□ -0.18
SEC13-216ENST00000479868 PEX5P50542 639 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 HLTFQ14527 1009 aaKnown RBP eCLIP13.95□□□□□ -0.18
SEC13-216ENST00000479868 KCTD2Q14681 263 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.95□□□□□ -0.18
SEC13-216ENST00000479868 LRRC71Q8N4P6 559 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 WHAMMQ8TF30 809 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 BBXQ8WY36 941 aaPredicted RBP13.95□□□□□ -0.18
SEC13-216ENST00000479868 COPS5Q92905 334 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 CD101Q93033 1021 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 ZIM3Q96PE6 472 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 RPS6KC1Q96S38 1066 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 NEUROG2Q9H2A3 272 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 NOP56O00567 594 aaKnown RBP13.95□□□□□ -0.18
SEC13-216ENST00000479868 MSCO60682 206 aa13.95□□□□□ -0.18
SEC13-216ENST00000479868 HSF2BPO75031 334 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms