RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ZNF28P17035 718 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 ABCB4P21439 1286 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 PRDX5P30044 214 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 SLC7A1P30825 629 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 KIR2DL3P43628 341 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 NCKAP1LP55160 1127 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 PDCD2Q16342 344 aaPredicted RBP6.28□□□□□ -1.4
UPF3B-203ENST00000478840 SESTD1Q86VW0 696 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 TRMT2AQ8IZ69 625 aaKnown RBP6.28□□□□□ -1.4
UPF3B-203ENST00000478840 PLA2G15Q8NCC3 412 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 CCHCR1Q8TD31 782 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 BRIX1Q8TDN6 353 aaKnown RBP6.28□□□□□ -1.4
UPF3B-203ENST00000478840 KBTBD7Q8WVZ9 684 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 ARL8AQ96BM9 186 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 DPH1Q9BZG8 443 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 MRPL46Q9H2W6 279 aaKnown RBP6.28□□□□□ -1.4
UPF3B-203ENST00000478840 SARS2Q9NP81 518 aaKnown RBP6.28□□□□□ -1.4
UPF3B-203ENST00000478840 TLR9Q9NR96 1032 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 SIDT1Q9NXL6 827 aaKnown RBP6.28□□□□□ -1.4
UPF3B-203ENST00000478840 OGDHLQ9ULD0 1010 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 CTDP1Q9Y5B0 961 aaPredicted RBP6.28□□□□□ -1.4
UPF3B-203ENST00000478840 A0A087WV62 115 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 C2orf78A6NCI8 922 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 ZNF503-AS2A6NEH8 195 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 POM121BA6NF01 834 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 SEMA7AO75326 666 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 GPR32O75388 356 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 ITGA10O75578 1167 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 KITP10721 976 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 GYPEP15421 78 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 ITGB5P18084 799 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 SMARCA1P28370 1054 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 GRK6P43250 576 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 KCNQ1P51787 676 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 FLYWCH1Q4VC44 716 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 TLDC1Q6P9B6 456 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 PPP1R3BQ86XI6 285 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 REXO1L1PQ8IX06 675 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 FAM9AQ8IZU1 332 aaPredicted RBP6.27□□□□□ -1.41
UPF3B-203ENST00000478840 SH2D3CQ8N5H7 860 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 NMD3Q96D46 503 aaKnown RBP6.27□□□□□ -1.41
UPF3B-203ENST00000478840 TMEM41AQ96HV5 264 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 UHRF1Q96T88 793 aaPredicted RBP6.27□□□□□ -1.41
UPF3B-203ENST00000478840 TRIM54Q9BYV2 358 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 MCOLN1Q9GZU1 580 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 AGO4Q9HCK5 861 aaKnown RBP6.27□□□□□ -1.41
UPF3B-203ENST00000478840 CNNM1Q9NRU3 951 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 TMEM140Q9NV12 185 aa6.27□□□□□ -1.41
UPF3B-203ENST00000478840 A0A1W2PPC4 97 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 F8W8V4 182 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 F2RL2O00254 374 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 ADAMTS3O15072 1205 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 TEX33O43247 280 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 BRAFP15056 766 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 PCSK1P29120 753 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 IL13P35225 146 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 SARSP49591 514 aaKnown RBP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 SP140Q13342 867 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 KHDC1LQ5JSQ8 128 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 HIBCHQ6NVY1 386 aaPredicted RBP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 TRMT10BQ6PF06 316 aaKnown RBP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 LARP4Q71RC2 724 aaKnown RBP eCLIP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 ZNF572Q7Z3I7 529 aaPredicted RBP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 SPATA5Q8NB90 893 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 ZBTB8AQ96BR9 441 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 AJUBAQ96IF1 538 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 SCLT1Q96NL6 688 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 ISCA1Q9BUE6 129 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 TTLL2Q9BWV7 592 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 SENP6Q9GZR1 1112 aaPredicted RBP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 STK32BQ9NY57 414 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 RGS17Q9UGC6 210 aaPredicted RBP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 CDC23Q9UJX2 597 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 AJAP1Q9UKB5 411 aaPredicted RBP6.26□□□□□ -1.41
UPF3B-203ENST00000478840 MED16Q9Y2X0 877 aa6.26□□□□□ -1.41
UPF3B-203ENST00000478840 hCG_1642624A0A1W2PR95 340 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 NPHP1O15259 732 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 TLR5O60602 858 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 THP07101 528 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 PARP1P09874 1014 aaKnown RBP6.25□□□□□ -1.41
UPF3B-203ENST00000478840 IL2RBP14784 551 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 PPM1FP49593 454 aaPredicted RBP6.25□□□□□ -1.41
UPF3B-203ENST00000478840 SUMO3P55854 103 aaPredicted RBP6.25□□□□□ -1.41
UPF3B-203ENST00000478840 HTRA4P83105 476 aaPredicted RBP6.25□□□□□ -1.41
UPF3B-203ENST00000478840 ADAM15Q13444 863 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 TRIM14Q14142 442 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 PCOLCEQ15113 449 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 RTKN2Q8IZC4 609 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 DCBLD1Q8N8Z6 715 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 NUDT10Q8NFP7 164 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 SLC7A6OSQ96CW6 309 aaPredicted RBP6.25□□□□□ -1.41
UPF3B-203ENST00000478840 NUDT11Q96G61 164 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 NAP1L4Q99733 375 aaKnown RBP6.25□□□□□ -1.41
UPF3B-203ENST00000478840 BRIP1Q9BX63 1249 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 ADAM7Q9H2U9 754 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 LDAHQ9H6V9 325 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 GCM1Q9NP62 436 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 ING3Q9NXR8 418 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 COL20A1Q9P218 1284 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms