RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KIAA1024Q9UPX6 916 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PCDHB6Q9Y5E3 794 aa13.51□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CASTOR2A6NHX0 329 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ANHXE9PGG2 379 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 H0Y858 1186 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ABLIM1O14639 778 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PI15O43692 258 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 LAMP2P13473 410 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 FGFR3P22607 806 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CCT6AP40227 531 aaKnown RBP13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PRPHP41219 470 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MAPK7Q13164 816 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 DCAF4L1Q3SXM0 396 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ELMSAN1Q6PJG2 1045 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 DEPTORQ8TB45 409 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RSAD2Q8WXG1 361 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 STAMQ92783 540 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ADPGKQ9BRR6 497 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 NTPCRQ9BSD7 190 aaKnown RBP13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MMTAG2Q9BU76 263 aaKnown RBP13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 KIFC3Q9BVG8 833 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 TMEM134Q9H6X4 195 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 WNT16Q9UBV4 365 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 TNFSF13BQ9Y275 285 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 STK24Q9Y6E0 443 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MYH11P35749 1972 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SPTBN4Q9H254 2564 aa13.5□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SPDYE4A6NLX3 237 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 LAD1O00515 517 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ADAM12O43184 909 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 NARSO43776 548 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MYBP10242 640 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 AOC1P19801 751 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PROZP22891 400 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 NBL1P41271 181 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 NPTX2P47972 431 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ELAVL2Q12926 359 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 UPP1Q16831 310 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ATF7IP2Q5U623 682 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 FAM171A1Q5VUB5 890 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 C1orf186Q6ZWK4 172 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 IFT74Q96LB3 600 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ACO2Q99798 780 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 DDX19AQ9NUU7 478 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 FAM86C1Q9NVL1 165 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ARHGAP28Q9P2N2 729 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CACNA1IQ9P0X4 2223 aa13.49□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 KRBA1A5PL33 1030 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 E9PMD0 336 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 K7ERI5 159 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 POU2F2P09086 479 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 HNRNPA1P09651 372 aaKnown RBP eCLIP13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 HOXA9P31269 272 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RAB33AQ14088 237 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 HYIQ5T013 277 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RINT1Q6NUQ1 792 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 DCLRE1AQ6PJP8 1040 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RSPO2Q6UXX9 243 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 KCNK18Q7Z418 384 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 GLYCTKQ8IVS8 523 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 FAM184AQ8NB25 1140 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 HASPINQ8TF76 798 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ATOH1Q92858 354 aaPredicted RBP13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 NOL7Q9UMY1 257 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 GDAQ9Y2T3 454 aa13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PDCD11Q14690 1871 aaKnown RBP13.48□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MYH15Q9Y2K3 1946 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 GVINP1Q7Z2Y8 2422 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SMIM28A0A1B0GU29 152 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PP2D1A8MPX8 630 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MEFVO15553 781 aaPredicted RBP13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ST18O60284 1047 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CDC25AP30304 524 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 GBP2P32456 591 aaPredicted RBP13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 GRM5P41594 1212 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CLCNKBP51801 687 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 HTR4Q13639 388 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PSMD5Q16401 504 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 UVSSAQ2YD98 709 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 PDXDC1Q6P996 788 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RTL10Q7L3V2 364 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CEP120Q8N960 986 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 C3orf58Q8NDZ4 430 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SNX29Q8TEQ0 813 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 KCNN1Q92952 543 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RUSC1Q9BVN2 902 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CDT1Q9H211 546 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 C17orf75Q9HAS0 396 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MTRRQ9UBK8 725 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 DNM3Q9UQ16 869 aa13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RBM19Q9Y4C8 960 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ZFP37Q9Y6Q3 630 aaPredicted RBP13.47□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 FANCMQ8IYD8 2048 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ZNF292O60281 2723 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 TBC1D4O60343 1298 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 HIP1RO75146 1068 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SRFP11831 508 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms