RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TRIM61Q5EBN2 209 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 AXDND1Q5T1B0 1012 aaPredicted RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 ZKSCAN2Q63HK3 967 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 NAIF1Q69YI7 327 aaPredicted RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 FSTL4Q6MZW2 842 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 EFCAB12Q6NXP0 572 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 CYP2U1Q7Z449 544 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 ZNF589Q86UQ0 364 aaPredicted RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 FMNL3Q8IVF7 1028 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 GPR65Q8IYL9 337 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 MIER1Q8N108 512 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 SMG8Q8ND04 991 aaKnown RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 GSTCDQ8NEC7 633 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 LNX1Q8TBB1 728 aaPredicted RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 PI4K2BQ8TCG2 481 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 RSPH1Q8WYR4 309 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 PIGKQ92643 395 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 EZH1Q92800 747 aaPredicted RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 CDHR1Q96JP9 859 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 ZFYVE19Q96K21 471 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 ZFP42Q96MM3 310 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 FCRL3Q96P31 734 aaPredicted RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 PAAF1Q9BRP4 392 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 KAT14Q9H8E8 782 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 RSAD1Q9HA92 442 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 AVENQ9NQS1 362 aaPredicted RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.45□□□□□ -1.54
USP4-209ENST00000475873 TOR4AQ9NXH8 423 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 GTSE1Q9NYZ3 720 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 PIN4Q9Y237 131 aaKnown RBP5.45□□□□□ -1.54
USP4-209ENST00000475873 PCDHB2Q9Y5E7 798 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 KIAA1549LQ6ZVL6 1849 aa5.45□□□□□ -1.54
USP4-209ENST00000475873 ICE1Q9Y2F5 2266 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 PNMA6FA0A0J9YX94 578 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 HEPACAM2A8MVW5 462 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 B8ZZF3 427 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 DDX39AO00148 427 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 ZNF263O14978 683 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 DHX15O43143 795 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 SH3BP5O60239 455 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 MAFO75444 373 aaPredicted RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 GJB3O75712 270 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 RHOBTB1O94844 696 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 GJA1P17302 382 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 HOXA11P31270 313 aaPredicted RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 GBP1P32455 592 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 EIF2S3P41091 472 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 PTGER3P43115 390 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 CCR10P46092 362 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 SCNN1GP51170 649 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 TNK2Q07912 1038 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 GRM4Q14833 912 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 SEC23AQ15436 765 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 TRIP6Q15654 476 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 UBE2SQ16763 222 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 USP41Q3LFD5 358 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 LIN9Q5TKA1 542 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 SWSAP1Q6NVH7 229 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 TMPRSS7Q7RTY8 843 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 GPIHBP1Q8IV16 184 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 MFSD6LQ8IWD5 586 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 HS6ST3Q8IZP7 471 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 FRMD1Q8N878 549 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 URGCPQ8TCY9 931 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 OTUD7AQ8TE49 926 aaPredicted RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 DEPDC1BQ8WUY9 529 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 PIBF1Q8WXW3 757 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 SMARCD2Q92925 531 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 TNPO1Q92973 898 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 CEP89Q96ST8 783 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 ZSCAN10Q96SZ4 725 aaPredicted RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 GAD1Q99259 594 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 TRIM4Q9C037 500 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 LRRCC1Q9C099 1032 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 TRPV4Q9HBA0 871 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 LY9Q9HBG7 655 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 SENP2Q9HC62 589 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 AGO4Q9HCK5 861 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 FBRSL1Q9HCM7 1045 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 CSMD1Q96PZ7 3565 aa5.44□□□□□ -1.54
USP4-209ENST00000475873 TLN1Q9Y490 2541 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 ATXN2Q99700 1313 aaKnown RBP5.44□□□□□ -1.54
USP4-209ENST00000475873 CACNA1DQ01668 2161 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 SETD2Q9BYW2 2564 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 A0A087WZ62 844 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 A0A0D9SFI3 127 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 FAM149AA5PLN7 773 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 ARL5CA6NH57 179 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 OTOL1A6NHN0 477 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 BACH1O14867 736 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 CBFA2T3O75081 653 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 DKK1O94907 266 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 MLH1P40692 756 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 CSRP3P50461 194 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 RAB27AP51159 221 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 KPNA1P52294 538 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 FCHO2Q0JRZ9 810 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 RAB33AQ14088 237 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 LY6DQ14210 128 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 UVSSAQ2YD98 709 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms