RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 KCNG1Q9UIX4 513 aa14.36□□□□□ -0.11
TPM3-216ENST00000473036 PCDHGC5Q9Y5F6 944 aa14.36□□□□□ -0.11
TPM3-216ENST00000473036 PRPF6O94906 941 aaKnown RBP14.35□□□□□ -0.11
TPM3-216ENST00000473036 MCF2P10911 925 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 HARSP12081 509 aaKnown RBP14.35□□□□□ -0.11
TPM3-216ENST00000473036 TNFSF9P41273 254 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 GRM5P41594 1212 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 XKR4Q5GH76 650 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 L1TD1Q5T7N2 865 aaKnown RBP14.35□□□□□ -0.11
TPM3-216ENST00000473036 UNC13DQ70J99 1090 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 CCDC65Q8IXS2 484 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 CEP57L1Q8IYX8 460 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 SLC39A11Q8N1S5 342 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 TMEM87AQ8NBN3 555 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 P2RX5Q93086 422 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 ZMAT2Q96NC0 199 aaKnown RBP14.35□□□□□ -0.11
TPM3-216ENST00000473036 POP1Q99575 1024 aaKnown RBP14.35□□□□□ -0.11
TPM3-216ENST00000473036 GBP3Q9H0R5 595 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 MARCH5Q9NX47 278 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 ANKFY1Q9P2R3 1169 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 STYXL1Q9Y6J8 313 aa14.35□□□□□ -0.11
TPM3-216ENST00000473036 A0A0B4J269 797 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 C19orf67A6NJJ6 358 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 H0YCG3 227 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 HNRNPDLO14979 420 aaKnown RBP14.34□□□□□ -0.11
TPM3-216ENST00000473036 ZC3H11AO75152 810 aaKnown RBP eCLIP14.34□□□□□ -0.11
TPM3-216ENST00000473036 NR1I2O75469 434 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 FGF18O76093 207 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 CSPG5O95196 566 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 GCNT3O95395 438 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 IL9P15248 144 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 LAG3P18627 525 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 MRE11P49959 708 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 ERVFC1P60507 584 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 AMPD3Q01432 767 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 DPYDQ12882 1025 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 NOLC1Q14978 699 aaKnown RBP eCLIP14.34□□□□□ -0.11
TPM3-216ENST00000473036 SLC10A6Q3KNW5 377 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 GLRA4Q5JXX5 417 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 SPOUT1Q5T280 376 aaKnown RBP14.34□□□□□ -0.11
TPM3-216ENST00000473036 ADHFE1Q8IWW8 467 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 THNSL1Q8IYQ7 743 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 SCFD1Q8WVM8 642 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 POF1BQ8WVV4 589 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 RABGGTAQ92696 567 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 MFSD14AQ96MC6 490 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 PYM1Q9BRP8 204 aaKnown RBP14.34□□□□□ -0.11
TPM3-216ENST00000473036 ADPGKQ9BRR6 497 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 MRPL9Q9BYD2 267 aaKnown RBP14.34□□□□□ -0.11
TPM3-216ENST00000473036 LMAN2LQ9H0V9 348 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 NSUN3Q9H649 340 aaKnown RBP14.34□□□□□ -0.11
TPM3-216ENST00000473036 UBN1Q9NPG3 1134 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 USP25Q9UHP3 1055 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 RWDD3Q9Y3V2 267 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 WDFY4Q6ZS81 3184 aa14.34□□□□□ -0.11
TPM3-216ENST00000473036 NRP1O14786 923 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 CLDN3O15551 220 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 EFEMP2O95967 443 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 LIG4P49917 911 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 WNT7BP56706 349 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 PLCB3Q01970 1234 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 NHLH1Q02575 133 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 ZP2Q05996 745 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 SOX4Q06945 474 aaPredicted RBP14.33□□□□□ -0.12
TPM3-216ENST00000473036 STK4Q13043 487 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 KMT5BQ4FZB7 885 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 FAM26FQ5R3K3 315 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 CRELD2Q6UXH1 353 aaPredicted RBP14.33□□□□□ -0.12
TPM3-216ENST00000473036 KIAA0895Q8NCT3 520 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 ZNF507Q8TCN5 953 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 URGCPQ8TCY9 931 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 BICD1Q96G01 975 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 SNX27Q96L92 541 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 ZNF558Q96NG5 402 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 PPP1R10Q96QC0 940 aaKnown RBP14.33□□□□□ -0.12
TPM3-216ENST00000473036 TCHPQ9BT92 498 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 C11orf84Q9BUA3 381 aaPredicted RBP14.33□□□□□ -0.12
TPM3-216ENST00000473036 LRRC27Q9C0I9 530 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 SLC39A2Q9NP94 309 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 PCDHB12Q9Y5F1 795 aa14.33□□□□□ -0.12
TPM3-216ENST00000473036 PVALEFA0A1B0GWK0 134 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 GOLGA6L4A6NEF3 574 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 TGFB1I1O43294 461 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 CXCL8P10145 99 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 SCP2P22307 547 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 RNASELQ05823 741 aaKnown RBP14.32□□□□□ -0.12
TPM3-216ENST00000473036 ENOX2Q16206 610 aaKnown RBP14.32□□□□□ -0.12
TPM3-216ENST00000473036 CD300LGQ6UXG3 332 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 ERCC4Q92889 916 aaPredicted RBP14.32□□□□□ -0.12
TPM3-216ENST00000473036 HVCN1Q96D96 273 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 IGSF21Q96ID5 467 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 PRRX2Q99811 253 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 KANSL3Q9P2N6 904 aa14.32□□□□□ -0.12
TPM3-216ENST00000473036 VWA8A3KMH1 1905 aa14.31□□□□□ -0.12
TPM3-216ENST00000473036 SMIM28A0A1B0GU29 152 aa14.31□□□□□ -0.12
TPM3-216ENST00000473036 TTC26A0AVF1 554 aa14.31□□□□□ -0.12
TPM3-216ENST00000473036 FSCN2O14926 492 aa14.31□□□□□ -0.12
TPM3-216ENST00000473036 ADRB2P07550 413 aa14.31□□□□□ -0.12
TPM3-216ENST00000473036 GTF2F1P35269 517 aaKnown RBP eCLIP14.31□□□□□ -0.12
TPM3-216ENST00000473036 ACOT2P49753 483 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms