RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 DKC1O60832 514 aaKnown RBP eCLIP14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 KRT10P13645 584 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 CYP11B1P15538 503 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 ALDH5A1P51649 535 aaPredicted RBP14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 EPHB4P54760 987 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 KCNT1Q5JUK3 1230 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 PSPC1Q8WXF1 523 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 CDHR1Q96JP9 859 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 FIZ1Q96SL8 496 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 TSKSQ9UJT2 592 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 AGTPBP1Q9UPW5 1226 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 AFG3L2Q9Y4W6 797 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 NDUFAB1O14561 156 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 ERVK-9P63128 1117 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 IFRD2Q12894 506 aaPredicted RBP14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 UAP1Q16222 522 aaPredicted RBP14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 SGO2Q562F6 1265 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 EFCAB12Q6NXP0 572 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 SEPT1Q8WYJ6 367 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 MAGED2Q9UNF1 606 aaPredicted RBP14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 HES2Q9Y543 173 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 ARIH2O95376 493 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 KCNA2P16389 499 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 GLRA2P23416 452 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 ADCY8P40145 1251 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 RGS7P49802 495 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 MYL6P60660 151 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 NCOA4Q13772 614 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 NEK9Q8TD19 979 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 EDEM3Q9BZQ6 932 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 FOXO6A8MYZ6 492 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 OPA1O60313 960 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 PRKCBP05771 671 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 SEC24CP53992 1094 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 ASTE1Q2TB18 679 aaPredicted RBP14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 FAM160B1Q5W0V3 765 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 ERVK-5Q9HDB9 667 aa14.71□□□□□ -0.05
CCDC88A-211ENST00000471947 MYH11P35749 1972 aa14.71□□□□□ -0.06
CCDC88A-211ENST00000471947 PRRC2BQ5JSZ5 2229 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 LRRD1A4D1F6 860 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 ANKRD62A6NC57 917 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 E7EVH7 732 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 DYNC1LI2O43237 492 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 CALCOCO2Q13137 446 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 KIZQ2M2Z5 673 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 EMC1Q8N766 993 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 KLK14Q9P0G3 267 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 O00370 1275 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 HNRNPH3P31942 346 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 ADCYAP1R1P41586 468 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 NOP14P78316 857 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 CYP24A1Q07973 514 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 NFX1Q12986 1120 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 AFG1LQ8WV93 481 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 SNCAIPQ9Y6H5 919 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 COL4A5P29400 1685 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 THSD7AQ9UPZ6 1657 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 CXCL8P10145 99 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 PYGMP11217 842 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 GTF2H1P32780 548 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 EPHX2P34913 555 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 CDK17Q00537 523 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 PPP2R5AQ15172 486 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 UBA3Q8TBC4 463 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 FAM71BQ8TC56 605 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 GPRASP2Q96D09 838 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 MTUS1Q9ULD2 1270 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 ZNF148Q9UQR1 794 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 TAF1LQ8IZX4 1826 aa14.7□□□□□ -0.06
CCDC88A-211ENST00000471947 CST3P01034 146 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 C1orf131Q8NDD1 294 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 EPS8L1Q8TE68 723 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 SAE1Q9UBE0 346 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 CPA4Q9UI42 421 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 A0A087WZ62 844 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 NEFHP12036 1026 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 CYP2B6P20813 491 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 C10orf76Q5T2E6 689 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 EEF1DP3Q658K8 133 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 ZNF365Q70YC5 407 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 GPC2Q8N158 579 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 RBBP8NLQ8NC74 664 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 FDXACB1Q9BRP7 624 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 POLIQ9UNA4 740 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 SOWAHBA6NEL2 793 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 TLR3O15455 904 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 MYZAPP0CAP1 466 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 FECHP22830 423 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 ZNF280AP59817 542 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 CCDC137Q6PK04 289 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 NT5DC3Q86UY8 548 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 NETO2Q8NC67 525 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 INPP4AQ96PE3 977 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 CALN1Q9BXU9 219 aa14.69□□□□□ -0.06
CCDC88A-211ENST00000471947 ZNF699Q32M78 642 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 BSPRYQ5W0U4 402 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 SLC39A4Q6P5W5 647 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 TMEM192Q8IY95 271 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 MDM1Q8TC05 714 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms