RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 APPBP2Q92624 585 aa5.78□□□□□ -1.48
CCDC88A-210ENST00000468534 SEZ6LQ9BYH1 1024 aa5.78□□□□□ -1.48
CCDC88A-210ENST00000468534 CPEB1Q9BZB8 566 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-210ENST00000468534 MS4A5Q9H3V2 200 aa5.78□□□□□ -1.48
CCDC88A-210ENST00000468534 CLIC5Q9NZA1 410 aa5.78□□□□□ -1.48
CCDC88A-210ENST00000468534 RFPL3O75679 317 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 HSP90AB1P08238 724 aaKnown RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 PROZP22891 400 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 XPAP23025 273 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 APOBEC3AP31941 199 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 KPNA1P52294 538 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 DSG1Q02413 1049 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 MGAT5Q09328 741 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 LRRC41Q15345 812 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 HDGFL2Q7Z4V5 671 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 RPAINQ86UA6 219 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 FAM83AQ86UY5 434 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 LSM14AQ8ND56 463 aaKnown RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 ZNF496Q96IT1 587 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 GPR101Q96P66 508 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 ENKD1Q9H0I2 346 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 PTPRHQ9HD43 1115 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 INTS7Q9NVH2 962 aaKnown RBP5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 TRPM5Q9NZQ8 1165 aa5.77□□□□□ -1.49
CCDC88A-210ENST00000468534 SYNRGQ9UMZ2 1314 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 TRIM24O15164 1050 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 TGM5O43548 720 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 ALDH1L1O75891 902 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 ZFP36P26651 326 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 DUSP2Q05923 314 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 MORC3Q14149 939 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 LRRC32Q14392 662 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 TTF1Q15361 905 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 ALFQ53S48 1182 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 ERAP2Q6P179 960 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 SUGP1Q8IWZ8 645 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 GLB1L3Q8NCI6 653 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 PPP1R14CQ8TAE6 165 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 GAB3Q8WWW8 586 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 FDXACB1Q9BRP7 624 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 LSM14BQ9BX40 385 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 ACAD8Q9UKU7 415 aa5.76□□□□□ -1.49
CCDC88A-210ENST00000468534 AHRRA9YTQ3 701 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 PRRT4C9JH25 899 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 LPXNO60711 386 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 MTA2O94776 668 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 SCGB1D2O95969 90 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 PFKMP08237 780 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 LAG3P18627 525 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 ATF3P18847 181 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 ATICP31939 592 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 PEX19P40855 299 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 TDO2P48775 406 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 FAM189BP81408 668 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 PPARAQ07869 468 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 MRPL49Q13405 166 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 SART3Q15020 963 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 TCEA2Q15560 299 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 LMBR1LQ6UX01 489 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 KRT26Q7Z3Y9 468 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 C14orf80Q86SX3 495 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 LRRTM3Q86VH5 581 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 SPICE1Q8N0Z3 855 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 BEND2Q8NDZ0 799 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 OR52N2Q8NGI0 321 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 GOLGA1Q92805 767 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 NDC1Q9BTX1 674 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 MTFR1LQ9H019 292 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 KCNH6Q9H252 994 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 SPON1Q9HCB6 807 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 ANKFY1Q9P2R3 1169 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 ZNHIT2Q9UHR6 403 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 TAGLN3Q9UI15 199 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 PACSIN3Q9UKS6 424 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 ATP8A1Q9Y2Q0 1164 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 RABGAP1Q9Y3P9 1069 aa5.75□□□□□ -1.49
CCDC88A-210ENST00000468534 CENPVL1A0A0U1RR11 272 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 SHTN1A0MZ66 631 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 PRSS38A1L453 326 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 GRID2IPA4D2P6 1211 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 B3GALT2O43825 422 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 RHOBTB3O94955 611 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 CLK1P49759 484 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 GZMKP49863 264 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 GEMIN4P57678 1058 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 PCBP1Q15365 356 aaKnown RBP eCLIP5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 TKFCQ3LXA3 575 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 HECTD2Q5U5R9 776 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 KIF18BQ86Y91 864 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 HOMER1Q86YM7 354 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 VPS37AQ8NEZ2 397 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 FBXO41Q8TF61 875 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 ORAI3Q9BRQ5 295 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 RIOX1Q9H6W3 641 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 CYP4F11Q9HBI6 524 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 SPTLC3Q9NUV7 552 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 USP36Q9P275 1121 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 FBXO2Q9UK22 296 aaPredicted RBP5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 HDAC9Q9UKV0 1011 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms