RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 TMEM173Q86WV6 379 aaPredicted RBP14.27□□□□□ -0.13
COL28A1-206ENST00000465339 VPS52Q8N1B4 723 aa14.27□□□□□ -0.13
COL28A1-206ENST00000465339 BICD1Q96G01 975 aa14.27□□□□□ -0.13
COL28A1-206ENST00000465339 ZBTB45Q96K62 511 aaPredicted RBP14.27□□□□□ -0.13
COL28A1-206ENST00000465339 SPATA32Q96LK8 384 aa14.27□□□□□ -0.13
COL28A1-206ENST00000465339 ACAP3Q96P50 834 aa14.27□□□□□ -0.13
COL28A1-206ENST00000465339 FIZ1Q96SL8 496 aa14.27□□□□□ -0.13
COL28A1-206ENST00000465339 SCAND2PQ9GZW5 306 aaPredicted RBP14.27□□□□□ -0.13
COL28A1-206ENST00000465339 IRAK3Q9Y616 596 aa14.27□□□□□ -0.13
COL28A1-206ENST00000465339 C2orf71A6NGG8 1288 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 ABLIM1O14639 778 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 PTGESO14684 152 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 CTSAP10619 480 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 BMP1P13497 986 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 NMT1P30419 496 aaKnown RBP14.26□□□□□ -0.13
COL28A1-206ENST00000465339 LIG4P49917 911 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 MCL1Q07820 350 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 NOLC1Q14978 699 aaKnown RBP eCLIP14.26□□□□□ -0.13
COL28A1-206ENST00000465339 KYAT1Q16773 422 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 DUSP6Q16828 381 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 PLPP4Q5VZY2 271 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 ADALQ6DHV7 355 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 KCNV2Q8TDN2 545 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 BCL7CQ8WUZ0 217 aaPredicted RBP14.26□□□□□ -0.13
COL28A1-206ENST00000465339 LEO1Q8WVC0 666 aaPredicted RBP14.26□□□□□ -0.13
COL28A1-206ENST00000465339 DHX58Q96C10 678 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 HVCN1Q96D96 273 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 ZBP1Q9H171 429 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 MAGEF1Q9HAY2 307 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 OLFML3Q9NRN5 406 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 KBTBD4Q9NVX7 518 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 ANKFY1Q9P2R3 1169 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 SSX2IPQ9Y2D8 614 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 PRG3Q9Y2Y8 225 aaPredicted RBP14.26□□□□□ -0.13
COL28A1-206ENST00000465339 PCDHGC5Q9Y5F6 944 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 UNC80Q8N2C7 3258 aa14.26□□□□□ -0.13
COL28A1-206ENST00000465339 TCF20Q9UGU0 1960 aaKnown RBP14.25□□□□□ -0.13
COL28A1-206ENST00000465339 HIDE1A8MVS5 230 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 HNRNPDLO14979 420 aaKnown RBP14.25□□□□□ -0.13
COL28A1-206ENST00000465339 POLR2DO15514 142 aaKnown RBP14.25□□□□□ -0.13
COL28A1-206ENST00000465339 IDEP14735 1019 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 GTF2F1P35269 517 aaKnown RBP eCLIP14.25□□□□□ -0.13
COL28A1-206ENST00000465339 LTBRP36941 435 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 MATR3P43243 847 aaKnown RBP eCLIP14.25□□□□□ -0.13
COL28A1-206ENST00000465339 KCNQ1P51787 676 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 OSTNP61366 133 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 XKR4Q5GH76 650 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 HERC4Q5GLZ8 1057 aaPredicted RBP14.25□□□□□ -0.13
COL28A1-206ENST00000465339 ALKAL1Q6UXT8 129 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 SFR1Q86XK3 245 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 MAP4K3Q8IVH8 894 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 CCDC65Q8IXS2 484 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 CEP120Q8N960 986 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 TMEM87AQ8NBN3 555 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 MRPL44Q9H9J2 332 aaKnown RBP14.25□□□□□ -0.13
COL28A1-206ENST00000465339 SLC38A7Q9NVC3 462 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 PANK4Q9NVE7 773 aa14.25□□□□□ -0.13
COL28A1-206ENST00000465339 SMIM28A0A1B0GU29 152 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 FRMD3A2A2Y4 597 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 PER2O15055 1255 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 LINC01565O15544 149 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 TADA2AO75478 443 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 EFEMP2O95967 443 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 SOD2P04179 222 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 CLTAP09496 248 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 SRGAP2BP0DMP2 458 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 CMA1P23946 247 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 ALCAMQ13740 583 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 HSP90AA2PQ14568 343 aaPredicted RBP14.24□□□□□ -0.13
COL28A1-206ENST00000465339 NAB2Q15742 525 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 ZC2HC1CQ53FD0 456 aaPredicted RBP14.24□□□□□ -0.13
COL28A1-206ENST00000465339 SLFN12LQ6IEE8 588 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 CNNM4Q6P4Q7 775 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 TMEM184AQ6ZMB5 413 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.24□□□□□ -0.13
COL28A1-206ENST00000465339 UROC1Q96N76 676 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 PPP1R10Q96QC0 940 aaKnown RBP14.24□□□□□ -0.13
COL28A1-206ENST00000465339 STRA6Q9BX79 667 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 VN1R3Q9BXE9 311 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 CXCL16Q9H2A7 254 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 PLEKHA5Q9HAU0 1116 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 MRPL17Q9NRX2 175 aaKnown RBP14.24□□□□□ -0.13
COL28A1-206ENST00000465339 MARCH5Q9NX47 278 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 ADAM28Q9UKQ2 775 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 KCNH3Q9ULD8 1083 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 EXOC7Q9UPT5 735 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 FAM50BQ9Y247 325 aa14.24□□□□□ -0.13
COL28A1-206ENST00000465339 CUL9Q8IWT3 2517 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 NCOR1O75376 2440 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 PDCD11Q14690 1871 aaKnown RBP14.23□□□□□ -0.13
COL28A1-206ENST00000465339 A0A0C4DFX4 3053 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 A0A0B4J269 797 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 H3BQ06 376 aaPredicted RBP14.23□□□□□ -0.13
COL28A1-206ENST00000465339 DLL1O00548 723 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 HARSP12081 509 aaKnown RBP14.23□□□□□ -0.13
COL28A1-206ENST00000465339 KCNE1P15382 129 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 CA8P35219 290 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 NDUFV1P49821 464 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 DCLRE1AQ6PJP8 1040 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 GPR65Q8IYL9 337 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms