RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 GLRA4Q5JXX5 417 aa20.71■□□□□ 0.91
SF3A1-205ENST00000463818 ARL6IP4Q66PJ3 421 aaKnown RBP20.71■□□□□ 0.91
SF3A1-205ENST00000463818 LNX1Q8TBB1 728 aaPredicted RBP20.71■□□□□ 0.91
SF3A1-205ENST00000463818 PPP1R10Q96QC0 940 aaKnown RBP20.71■□□□□ 0.91
SF3A1-205ENST00000463818 NTPCRQ9BSD7 190 aaKnown RBP20.71■□□□□ 0.91
SF3A1-205ENST00000463818 TARS2Q9BW92 718 aaKnown RBP20.71■□□□□ 0.91
SF3A1-205ENST00000463818 MRPL4Q9BYD3 311 aaKnown RBP20.71■□□□□ 0.91
SF3A1-205ENST00000463818 RHOBTB2Q9BYZ6 727 aa20.71■□□□□ 0.91
SF3A1-205ENST00000463818 NT5C3AQ9H0P0 336 aa20.71■□□□□ 0.91
SF3A1-205ENST00000463818 WDR6Q9NNW5 1121 aaKnown RBP20.71■□□□□ 0.91
SF3A1-205ENST00000463818 ARHGAP28Q9P2N2 729 aa20.71■□□□□ 0.91
SF3A1-205ENST00000463818 PHLPP2Q6ZVD8 1323 aa20.71■□□□□ 0.91
SF3A1-205ENST00000463818 SLC16A4O15374 487 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 IGFBP6P24592 240 aaPredicted RBP20.7■□□□□ 0.9
SF3A1-205ENST00000463818 GUCY2CP25092 1073 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 RAD51AP2Q09MP3 1159 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 ELAVL2Q12926 359 aaKnown RBP20.7■□□□□ 0.9
SF3A1-205ENST00000463818 DCLRE1AQ6PJP8 1040 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 KCTD17Q8N5Z5 321 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 CEP120Q8N960 986 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 SYT2Q8N9I0 419 aaPredicted RBP20.7■□□□□ 0.9
SF3A1-205ENST00000463818 PIK3R5Q8WYR1 880 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 SMG7Q92540 1137 aaKnown RBP20.7■□□□□ 0.9
SF3A1-205ENST00000463818 ZNF707Q96C28 371 aaPredicted RBP20.7■□□□□ 0.9
SF3A1-205ENST00000463818 CDK5RAP3Q96JB5 506 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 CLSTN3Q9BQT9 956 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 TCHPQ9BT92 498 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 TIPINQ9BVW5 301 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 CCDC94Q9BW85 323 aaPredicted RBP20.7■□□□□ 0.9
SF3A1-205ENST00000463818 CDT1Q9H211 546 aa20.7■□□□□ 0.9
SF3A1-205ENST00000463818 SMIM28A0A1B0GU29 152 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 PLA2G4BP0C869 781 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 AVPR2P30518 371 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 GRM5P41594 1212 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 YARSP54577 528 aaKnown RBP20.69■□□□□ 0.9
SF3A1-205ENST00000463818 VCPP55072 806 aaKnown RBP20.69■□□□□ 0.9
SF3A1-205ENST00000463818 OSTNP61366 133 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 ZNF568Q3ZCX4 644 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 ALKAL1Q6UXT8 129 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 ALYREFQ86V81 257 aaKnown RBP20.69■□□□□ 0.9
SF3A1-205ENST00000463818 PRSS33Q8NF86 280 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 SPIRE2Q8WWL2 714 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 PRKD2Q9BZL6 878 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 PIDD1Q9HB75 910 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 KCNG1Q9UIX4 513 aa20.69■□□□□ 0.9
SF3A1-205ENST00000463818 MYO10Q9HD67 2058 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 N4BP1O75113 896 aaKnown RBP20.68■□□□□ 0.9
SF3A1-205ENST00000463818 B3GAT3O94766 335 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 PAPLNO95428 1278 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 PLS3P13797 630 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 CLCNKBP51801 687 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 SLC12A3P55017 1021 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 PSMD5Q16401 504 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 CD300LGQ6UXG3 332 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 STAMQ92783 540 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 ZBTB45Q96K62 511 aaPredicted RBP20.68■□□□□ 0.9
SF3A1-205ENST00000463818 KCNK12Q9HB15 430 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 ZDHHC7Q9NXF8 308 aa20.68■□□□□ 0.9
SF3A1-205ENST00000463818 ZNF318Q5VUA4 2279 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 ZDBF2Q9HCK1 2354 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 TDRD15B5MCY1 1934 aaKnown RBP20.67■□□□□ 0.9
SF3A1-205ENST00000463818 ABLIM1O14639 778 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 ZMYND10O75800 440 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 MCF2P10911 925 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 PROZP22891 400 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 GBP2P32456 591 aaPredicted RBP20.67■□□□□ 0.9
SF3A1-205ENST00000463818 SMTNP53814 917 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 UPP1Q16831 310 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 TMEM119Q4V9L6 283 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 XKR4Q5GH76 650 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 UROC1Q96N76 676 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 ACAP3Q96P50 834 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 PRRX2Q99811 253 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 GOLGA2P5Q9HBQ8 144 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 TOPORSQ9NS56 1045 aaPredicted RBP20.67■□□□□ 0.9
SF3A1-205ENST00000463818 CLUHO75153 1309 aa20.67■□□□□ 0.9
SF3A1-205ENST00000463818 NPHP3-ACAD11A0A0J9YXS1 232 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 TMEM189-UBE2V1I3L0A0 370 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 ADAM12O43184 909 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 FGFR3P22607 806 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 STRN3Q13033 797 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 TDGQ13569 410 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 PDXDC1Q6P996 788 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 MPZL3Q6UWV2 235 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.66■□□□□ 0.9
SF3A1-205ENST00000463818 TMEM161BQ8NDZ6 487 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 AK8Q96MA6 479 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 ZMAT2Q96NC0 199 aaKnown RBP20.66■□□□□ 0.9
SF3A1-205ENST00000463818 MYADMQ96S97 322 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 KCND2Q9NZV8 630 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 FBXW11Q9UKB1 542 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 GTF3C3Q9Y5Q9 886 aa20.66■□□□□ 0.9
SF3A1-205ENST00000463818 HARSP12081 509 aaKnown RBP20.65■□□□□ 0.9
SF3A1-205ENST00000463818 UBA7P41226 1012 aa20.65■□□□□ 0.9
SF3A1-205ENST00000463818 PTPN5P54829 565 aa20.65■□□□□ 0.9
SF3A1-205ENST00000463818 CACNB1Q02641 598 aaPredicted RBP20.65■□□□□ 0.9
SF3A1-205ENST00000463818 SOX4Q06945 474 aaPredicted RBP20.65■□□□□ 0.9
SF3A1-205ENST00000463818 ARSHQ5FYA8 562 aa20.65■□□□□ 0.9
SF3A1-205ENST00000463818 DDX27Q96GQ7 796 aaKnown RBP20.65■□□□□ 0.9
SF3A1-205ENST00000463818 IGSF9Q9P2J2 1179 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms