RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CCT6AP40227 531 aaKnown RBP17.74■□□□□ 0.43
COL7A1-204ENST00000462475 FXR2P51116 673 aaKnown RBP eCLIP17.74■□□□□ 0.43
COL7A1-204ENST00000462475 NTHL1P78549 312 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 HTR4Q13639 388 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 PPP2R5AQ15172 486 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 DCAF4L1Q3SXM0 396 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 GLRA4Q5JXX5 417 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 NT5DC1Q5TFE4 455 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 GRASPQ7Z6J2 395 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-204ENST00000462475 C4orf32Q8N8J7 132 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 DTWD2Q8NBA8 298 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 GPR152Q8TDT2 470 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 NXPE3Q969Y0 559 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 NUMBLQ9Y6R0 609 aa17.74■□□□□ 0.43
COL7A1-204ENST00000462475 ANHXE9PGG2 379 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 C8AP07357 584 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 MUTP22033 750 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 FSHRP23945 695 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 RBM25P49756 843 aaKnown RBP17.73■□□□□ 0.43
COL7A1-204ENST00000462475 ANGPT1Q15389 498 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 LIN9Q5TKA1 542 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 ATF7IP2Q5U623 682 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 IFT74Q96LB3 600 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 TBC1D17Q9HA65 648 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 DDX19AQ9NUU7 478 aaKnown RBP17.73■□□□□ 0.43
COL7A1-204ENST00000462475 KIAA1024Q9UPX6 916 aa17.73■□□□□ 0.43
COL7A1-204ENST00000462475 STK25O00506 426 aa17.72■□□□□ 0.43
COL7A1-204ENST00000462475 CCL16O15467 120 aa17.72■□□□□ 0.43
COL7A1-204ENST00000462475 EIF5BO60841 1220 aaKnown RBP17.72■□□□□ 0.43
COL7A1-204ENST00000462475 TRAPPC10P48553 1259 aa17.72■□□□□ 0.43
COL7A1-204ENST00000462475 EFNA5P52803 228 aa17.72■□□□□ 0.43
COL7A1-204ENST00000462475 ELAVL2Q12926 359 aaKnown RBP17.72■□□□□ 0.43
COL7A1-204ENST00000462475 GNL2Q13823 731 aaKnown RBP17.72■□□□□ 0.43
COL7A1-204ENST00000462475 PPM1LQ5SGD2 360 aa17.72■□□□□ 0.43
COL7A1-204ENST00000462475 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-204ENST00000462475 CEP120Q8N960 986 aa17.72■□□□□ 0.43
COL7A1-204ENST00000462475 KIFAP3Q92845 792 aa17.72■□□□□ 0.43
COL7A1-204ENST00000462475 PPP1R10Q96QC0 940 aaKnown RBP17.72■□□□□ 0.43
COL7A1-204ENST00000462475 LRWD1Q9UFC0 647 aa17.72■□□□□ 0.43
COL7A1-204ENST00000462475 RIF1Q5UIP0 2472 aaKnown RBP17.72■□□□□ 0.43
COL7A1-204ENST00000462475 MTCL1Q9Y4B5 1905 aaKnown RBP17.71■□□□□ 0.43
COL7A1-204ENST00000462475 TMEM189-UBE2V1I3L0A0 370 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 B3GAT3O94766 335 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 HNRNPA1P09651 372 aaKnown RBP eCLIP17.71■□□□□ 0.43
COL7A1-204ENST00000462475 FGFR3P22607 806 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 RFX1P22670 979 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 CLCNKBP51801 687 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 HMGN5P82970 282 aaKnown RBP17.71■□□□□ 0.43
COL7A1-204ENST00000462475 CD300LGQ6UXG3 332 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 SLC7A14Q8TBB6 771 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 SNX29Q8TEQ0 813 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 FGF14Q92915 247 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 NKD2Q969F2 451 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-204ENST00000462475 RPP25Q9BUL9 199 aaKnown RBP17.71■□□□□ 0.43
COL7A1-204ENST00000462475 GOLGA2P5Q9HBQ8 144 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 ARHGEF3Q9NR81 526 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 NOL7Q9UMY1 257 aaKnown RBP17.71■□□□□ 0.43
COL7A1-204ENST00000462475 POLIQ9UNA4 740 aa17.71■□□□□ 0.43
COL7A1-204ENST00000462475 PTPRZ1P23471 2315 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-204ENST00000462475 PP2D1A8MPX8 630 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 I3L4J1 428 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 TKTP29401 623 aaKnown RBP17.7■□□□□ 0.42
COL7A1-204ENST00000462475 HOXA9P31269 272 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 OR1D2P34982 312 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 TOB1P50616 345 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-204ENST00000462475 RAB33AQ14088 237 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 PDXDC1Q6P996 788 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 PARM1Q6UWI2 310 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 RSPO2Q6UXX9 243 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-204ENST00000462475 DAW1Q8N136 415 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 IGSF22Q8N9C0 903 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 FAM184AQ8NB25 1140 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 C3orf58Q8NDZ4 430 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 CDT1Q9H211 546 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 SLC2A4RGQ9NR83 387 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 MTRRQ9UBK8 725 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 CDH7Q9ULB5 785 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 TNFSF13BQ9Y275 285 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 PCDHB6Q9Y5E3 794 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 VWA8A3KMH1 1905 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 PHLPP2Q6ZVD8 1323 aa17.7■□□□□ 0.42
COL7A1-204ENST00000462475 E9PMD0 336 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 K7ERI5 159 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 NPTX2P47972 431 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 PEX3P56589 373 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 SOX4Q06945 474 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-204ENST00000462475 PTGDRQ13258 359 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 UPP1Q16831 310 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 ZNF568Q3ZCX4 644 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 AXDND1Q5T1B0 1012 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-204ENST00000462475 DCLRE1AQ6PJP8 1040 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 TAS1R3Q7RTX0 852 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 ITFG1Q8TB96 612 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 FGF13Q92913 245 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 DDX27Q96GQ7 796 aaKnown RBP17.69■□□□□ 0.42
COL7A1-204ENST00000462475 ZSCAN31Q96LW9 406 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-204ENST00000462475 KIF2CQ99661 725 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 RUSC1Q9BVN2 902 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 SH2B1Q9NRF2 756 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-204ENST00000462475 HCFC1R1Q9NWW0 138 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms