RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SKIV2L2P42285 1042 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 MYL7Q01449 175 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 MOGSQ13724 837 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 FASTKD3Q14CZ7 662 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 SHROOM1Q2M3G4 852 aaPredicted RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 RHBDF2Q6PJF5 856 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 MTHFD1LQ6UB35 978 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 TRMT1LQ7Z2T5 733 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 FAM84AQ96KN4 292 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 KLF6Q99612 283 aaPredicted RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 GORASP1Q9BQQ3 440 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 A0A1W2PPM1 405 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 FAM47DPA6NHR8 397 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 IVDP26440 423 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 PSMC2P35998 433 aaKnown RBP12.48□□□□□ -0.41
CPSF3-202ENST00000460593 GPC5P78333 572 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 ORC2Q13416 577 aaPredicted RBP12.48□□□□□ -0.41
CPSF3-202ENST00000460593 C16orf86Q6ZW13 317 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 CYFIP1Q7L576 1253 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 RFWD2Q8NHY2 731 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 ZNF564Q8TBZ8 553 aaPredicted RBP12.48□□□□□ -0.41
CPSF3-202ENST00000460593 ZFP69BQ9UJL9 534 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 ZBTB12Q9Y330 459 aaPredicted RBP12.48□□□□□ -0.41
CPSF3-202ENST00000460593 SIGLEC16A6NMB1 481 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 EML1O00423 815 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 TBX10O75333 385 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 BANF1O75531 89 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 ASMTLO95671 621 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 BAG3O95817 575 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 CNGA1P29973 690 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 GCLMP48507 274 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 CLK2P49760 499 aaKnown RBP12.48□□□□□ -0.41
CPSF3-202ENST00000460593 YARSP54577 528 aaKnown RBP12.48□□□□□ -0.41
CPSF3-202ENST00000460593 C4orf50Q6ZRC1 276 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 BRINP3Q76B58 766 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 CCDC125Q86Z20 511 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 RHOT2Q8IXI1 618 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 ENDOVQ8N8Q3 282 aaKnown RBP12.48□□□□□ -0.41
CPSF3-202ENST00000460593 C7orf43Q8WVR3 580 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 C10orf82Q8WW14 230 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 ARL8BQ9NVJ2 186 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 USP20Q9Y2K6 914 aa12.48□□□□□ -0.41
CPSF3-202ENST00000460593 MIF4GDA9UHW6 222 aaKnown RBP12.47□□□□□ -0.41
CPSF3-202ENST00000460593 GOLGA8RI6L899 631 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 SPATA31D3P0C874 917 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 KRT15P19012 456 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 ATP5DP30049 168 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 ACVR2BQ13705 512 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 SPATA31D4Q6ZUB0 917 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 NLRP9Q7RTR0 991 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 OTOAQ7RTW8 1153 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 NOP9Q86U38 636 aaKnown RBP12.47□□□□□ -0.41
CPSF3-202ENST00000460593 SLC47A2Q86VL8 602 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 SYT2Q8N9I0 419 aaPredicted RBP12.47□□□□□ -0.41
CPSF3-202ENST00000460593 CD101Q93033 1021 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 ZNF653Q96CK0 615 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 FBXO6Q9NRD1 293 aaPredicted RBP12.47□□□□□ -0.41
CPSF3-202ENST00000460593 SCOCQ9UIL1 159 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 A0A0G2JND7 137 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 PNMA6FA0A0J9YX94 578 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 CYP1A1P04798 512 aaPredicted RBP12.47□□□□□ -0.41
CPSF3-202ENST00000460593 ATF2P15336 505 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 CA4P22748 312 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 PIK3CAP42336 1068 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 CDR2Q01850 454 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 SPIRE1Q08AE8 756 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 LBRQ14739 615 aaKnown RBP12.47□□□□□ -0.41
CPSF3-202ENST00000460593 ISLR2Q6UXK2 745 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 ZNF804AQ7Z570 1209 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 TAB3Q8N5C8 712 aaPredicted RBP12.47□□□□□ -0.41
CPSF3-202ENST00000460593 SNF8Q96H20 258 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 MOV10L1Q9BXT6 1211 aaKnown RBP12.47□□□□□ -0.41
CPSF3-202ENST00000460593 LMCD1Q9NZU5 365 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 FRMPD4Q14CM0 1322 aa12.47□□□□□ -0.41
CPSF3-202ENST00000460593 CYP26A1O43174 497 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 EXOC3O60645 756 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 ZBED4O75132 1171 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 ZSCAN5DPP0CG00 497 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 PYGBP11216 843 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 GYS1P13807 737 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 ANXA13P27216 316 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 MARK3P27448 753 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 CCDC15Q0P6D6 951 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 C11orf63Q6NUN7 778 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 SCYL3Q8IZE3 742 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 GLIS1Q8NBF1 620 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 IFT43Q96FT9 208 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 RTFDC1Q9BY42 306 aaPredicted RBP12.46□□□□□ -0.41
CPSF3-202ENST00000460593 ANO3Q9BYT9 981 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 MTMR4Q9NYA4 1195 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 ROBO3Q96MS0 1386 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 SCN7AQ01118 1682 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 EXOC1LA0A1B0GW35 172 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 FAM86B1E9PN63 330 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 FAM13AO94988 1023 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 FAM86B2P0C5J1 330 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 GCAP28676 217 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 SSTR3P32745 418 aaPredicted RBP12.46□□□□□ -0.41
CPSF3-202ENST00000460593 VHLP40337 213 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 MKRN3Q13064 507 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms