RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 GOLGA8RI6L899 631 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 PSMD10O75832 226 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 VCAM1P19320 739 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 ERFP50548 548 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 GPS1Q13098 491 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 DNAJC3Q13217 504 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 STRIP1Q5VSL9 837 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 WDR78Q5VTH9 848 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 FYB2Q5VWT5 728 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 TRMT10CQ7L0Y3 403 aaKnown RBP12.65□□□□□ -0.38
MSH6-204ENST00000445503 RPAINQ86UA6 219 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 ANKMY2Q8IV38 441 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 RBM15Q96T37 977 aaKnown RBP eCLIP12.65□□□□□ -0.388e-10■■□□□ 12.9
MSH6-204ENST00000445503 NOP53Q9NZM5 478 aaKnown RBP12.65□□□□□ -0.38
MSH6-204ENST00000445503 ARL2BPQ9Y2Y0 163 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 ROBO1Q9Y6N7 1651 aa12.65□□□□□ -0.39
MSH6-204ENST00000445503 ITGB4P16144 1822 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 MYH14Q7Z406 1995 aaKnown RBP12.64□□□□□ -0.39
MSH6-204ENST00000445503 NFIBO00712 420 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 TLR3O15455 904 aaKnown RBP12.64□□□□□ -0.39
MSH6-204ENST00000445503 GJB6O95452 261 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 KRT19P08727 400 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 MXRA7P84157 204 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 P3H1Q32P28 736 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 CHADLQ6NUI6 762 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 SCARA5Q6ZMJ2 495 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 MCF2L2Q86YR7 1114 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 CTAGE3PQ8IX95 158 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 PALM2Q8IXS6 379 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 ATL2Q8NHH9 583 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 EPS8L1Q8TE68 723 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 PGM2Q96G03 612 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 RPS6KC1Q96S38 1066 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 GTF3C4Q9UKN8 822 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.64□□□□□ -0.39
MSH6-204ENST00000445503 ZBED4O75132 1171 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 ATP6V1G2O95670 118 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 KRT10P13645 584 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 ITIH2P19823 946 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 CHKAP35790 457 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 POLGP54098 1239 aaPredicted RBP12.64□□□□□ -0.39
MSH6-204ENST00000445503 KCNJ2P63252 427 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 PPATQ06203 517 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 PRKG1Q13976 671 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 BMT2Q1RMZ1 405 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 SWT1Q5T5J6 900 aaKnown RBP12.64□□□□□ -0.39
MSH6-204ENST00000445503 PPP1R21Q6ZMI0 780 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 C3orf20Q8ND61 904 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 SUPT20HQ8NEM7 779 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 WRAP73Q9P2S5 460 aaPredicted RBP12.64□□□□□ -0.39
MSH6-204ENST00000445503 UVRAGQ9P2Y5 699 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 CIITAP33076 1130 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 MAN1A1P33908 653 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 ELF3P78545 371 aaPredicted RBP12.64□□□□□ -0.39
MSH6-204ENST00000445503 TRPC3Q13507 836 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 TAF11Q15544 211 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 BBS9Q3SYG4 887 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 UBAP2Q5T6F2 1119 aaKnown RBP12.64□□□□□ -0.39
MSH6-204ENST00000445503 SWSAP1Q6NVH7 229 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 MKL1Q969V6 931 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 KLF6Q99612 283 aaPredicted RBP12.64□□□□□ -0.39
MSH6-204ENST00000445503 TMEM39BQ9GZU3 492 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 NCANO14594 1321 aa12.64□□□□□ -0.39
MSH6-204ENST00000445503 POLRMTO00411 1230 aaKnown RBP12.63□□□□□ -0.39
MSH6-204ENST00000445503 SKAP2O75563 359 aaPredicted RBP12.63□□□□□ -0.39
MSH6-204ENST00000445503 ALCAMQ13740 583 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 CRY2Q49AN0 593 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 SPOPLQ6IQ16 392 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 ZBTB33Q86T24 672 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 EXOC3L1Q86VI1 746 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 ZBED8Q8IZ13 594 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 RSAD2Q8WXG1 361 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 ZNF668Q96K58 619 aaPredicted RBP12.63□□□□□ -0.39
MSH6-204ENST00000445503 ZWILCHQ9H900 591 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 SUFUQ9UMX1 484 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 TRIM33Q9UPN9 1127 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 OSTNP61366 133 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 CDR2Q01850 454 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 KIF22Q14807 665 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 CNGA2Q16280 664 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 SEZ6Q53EL9 994 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 C11orf63Q6NUN7 778 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 SH3BP5LQ7L8J4 393 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 FAM160B2Q86V87 743 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 VPS52Q8N1B4 723 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 BBOF1Q8ND07 529 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 CFAP57Q96MR6 1250 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 GEMIN8Q9NWZ8 242 aaKnown RBP12.63□□□□□ -0.39
MSH6-204ENST00000445503 FRMPD4Q14CM0 1322 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 BPIFB4P59827 614 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 ACAD10Q6JQN1 1059 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 PPP1R14CQ8TAE6 165 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 MCUR1Q96AQ8 359 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 ERP27Q96DN0 273 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 GJD4Q96KN9 370 aaPredicted RBP12.63□□□□□ -0.39
MSH6-204ENST00000445503 RAB3IPQ96QF0 476 aaPredicted RBP12.63□□□□□ -0.39
MSH6-204ENST00000445503 TRAIPQ9BWF2 469 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 OSBPL8Q9BZF1 889 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 PNMA3Q9UL41 463 aa12.63□□□□□ -0.39
MSH6-204ENST00000445503 CFAP73A6NFT4 308 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms