RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ZBTB41Q5SVQ8 909 aa20.37■□□□□ 0.85
SHH-203ENST00000435425 KRBA2Q6ZNG9 492 aa20.37■□□□□ 0.85
SHH-203ENST00000435425 ADGRD2Q7Z7M1 963 aa20.37■□□□□ 0.85
SHH-203ENST00000435425 RBM23Q86U06 439 aaKnown RBP20.37■□□□□ 0.85
SHH-203ENST00000435425 VPS52Q8N1B4 723 aa20.37■□□□□ 0.85
SHH-203ENST00000435425 COLEC11Q9BWP8 271 aa20.37■□□□□ 0.85
SHH-203ENST00000435425 A0A0B4J269 797 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 OGTO15294 1046 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 PRR29P0C7W0 189 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 CXCL8P10145 99 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 ALCAMQ13740 583 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 SLFN12LQ6IEE8 588 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 STXBP4Q6ZWJ1 553 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 POMGNT1Q8WZA1 660 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 FAM212AQ96EL1 285 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 SNX27Q96L92 541 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 PAAF1Q9BRP4 392 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 SLC39A2Q9NP94 309 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 MARCH5Q9NX47 278 aa20.36■□□□□ 0.85
SHH-203ENST00000435425 PDCD11Q14690 1871 aaKnown RBP20.36■□□□□ 0.85
SHH-203ENST00000435425 SMIM28A0A1B0GU29 152 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 PVALEFA0A1B0GWK0 134 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 FSCN2O14926 492 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 PER2O15055 1255 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 MEFVO15553 781 aaPredicted RBP20.35■□□□□ 0.85
SHH-203ENST00000435425 CLTAP09496 248 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 GTF2F1P35269 517 aaKnown RBP eCLIP20.35■□□□□ 0.85
SHH-203ENST00000435425 SPAG1Q07617 926 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 SLC10A6Q3KNW5 377 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 ALKAL1Q6UXT8 129 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 DDX53Q86TM3 631 aaKnown RBP20.35■□□□□ 0.85
SHH-203ENST00000435425 HASPINQ8TF76 798 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 NOC3LQ8WTT2 800 aaKnown RBP20.35■□□□□ 0.85
SHH-203ENST00000435425 AUTS2Q8WXX7 1259 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 ZMAT2Q96NC0 199 aaKnown RBP20.35■□□□□ 0.85
SHH-203ENST00000435425 GOLGA2P5Q9HBQ8 144 aa20.35■□□□□ 0.85
SHH-203ENST00000435425 AGO2Q9UKV8 859 aaKnown RBP20.35■□□□□ 0.85
SHH-203ENST00000435425 KLRC4O43908 158 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 CXCL14O95715 111 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 NRIP1P48552 1158 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 ACOT2P49753 483 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 HYAL1Q12794 435 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 NAB2Q15742 525 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 KMT5BQ4FZB7 885 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 PDE12Q6L8Q7 609 aaKnown RBP20.34■□□□□ 0.85
SHH-203ENST00000435425 NELFCDQ8IXH7 590 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 PPP2R3CQ969Q6 453 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 PPP1R10Q96QC0 940 aaKnown RBP20.34■□□□□ 0.85
SHH-203ENST00000435425 VN1R3Q9BXE9 311 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 TLE6Q9H808 572 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 TMEM206Q9H813 350 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 RPF1Q9H9Y2 349 aaKnown RBP20.34■□□□□ 0.85
SHH-203ENST00000435425 TSHZ2Q9NRE2 1034 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 EXOC1Q9NV70 894 aa20.34■□□□□ 0.85
SHH-203ENST00000435425 HIDE1A8MVS5 230 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 LACTBL1A8MY62 500 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 TADA2AO75478 443 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 RPN1P04843 607 aaKnown RBP20.33■□□□□ 0.85
SHH-203ENST00000435425 PPP2R3AQ06190 1150 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 HSP90AA2PQ14568 343 aaPredicted RBP20.33■□□□□ 0.85
SHH-203ENST00000435425 SMC1AQ14683 1233 aaKnown RBP20.33■□□□□ 0.85
SHH-203ENST00000435425 BMS1Q14692 1282 aaKnown RBP20.33■□□□□ 0.85
SHH-203ENST00000435425 POSTNQ15063 836 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 KYAT1Q16773 422 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 XKR4Q5GH76 650 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 TAS1R1Q7RTX1 841 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.33■□□□□ 0.85
SHH-203ENST00000435425 FMR1NBQ8N0W7 255 aaPredicted RBP20.33■□□□□ 0.85
SHH-203ENST00000435425 HLA-CQ95604 372 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 C18orf25Q96B23 403 aaPredicted RBP20.33■□□□□ 0.85
SHH-203ENST00000435425 ZBP1Q9H171 429 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 PCIF1Q9H4Z3 704 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 NGRNQ9NPE2 291 aaKnown RBP20.33■□□□□ 0.85
SHH-203ENST00000435425 CLDND1Q9NY35 253 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 CNTN3Q9P232 1028 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 THEGQ9P2T0 379 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 STYXL1Q9Y6J8 313 aa20.33■□□□□ 0.85
SHH-203ENST00000435425 ANK1P16157 1881 aa20.33■□□□□ 0.84
SHH-203ENST00000435425 COL6A3P12111 3177 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 FAM189A1O60320 539 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 GADD45BO75293 160 aaPredicted RBP20.32■□□□□ 0.84
SHH-203ENST00000435425 KCNE1P15382 129 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 ADSSP30520 456 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 CLCNKBP51801 687 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 TFF2Q03403 129 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 SOX4Q06945 474 aaPredicted RBP20.32■□□□□ 0.84
SHH-203ENST00000435425 EHHADHQ08426 723 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 ENOX2Q16206 610 aaKnown RBP20.32■□□□□ 0.84
SHH-203ENST00000435425 EPM2AIP1Q7L775 607 aaPredicted RBP20.32■□□□□ 0.84
SHH-203ENST00000435425 SAAL1Q96ER3 474 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 KIF12Q96FN5 646 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 SLC38A7Q9NVC3 462 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 CPSF3Q9UKF6 684 aaKnown RBP20.32■□□□□ 0.84
SHH-203ENST00000435425 ADAM28Q9UKQ2 775 aa20.32■□□□□ 0.84
SHH-203ENST00000435425 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.31■□□□□ 0.84
SHH-203ENST00000435425 GOLGA8IPA6NC78 632 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 GOLGA8JA6NMD2 632 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 C2CD2LO14523 706 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 EIF3DO15371 548 aaKnown RBP eCLIP20.31■□□□□ 0.84
SHH-203ENST00000435425 LINC01565O15544 149 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms