RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 MLC1Q15049 377 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 NOMO1Q15155 1222 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 RABL3Q5HYI8 236 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 CRB2Q5IJ48 1285 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 IFIT1BQ5T764 474 aaKnown RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 BTNL9Q6UXG8 535 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 NOL8Q76FK4 1167 aaKnown RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 APBB1IPQ7Z5R6 666 aaPredicted RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 ZNF276Q8N554 614 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 RNF169Q8NCN4 708 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 OR52N2Q8NGI0 321 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 CPT1CQ8TCG5 803 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 NRG4Q8WWG1 115 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 RIN2Q8WYP3 895 aaPredicted RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 CEP95Q96GE4 821 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 UHRF1Q96T88 793 aaPredicted RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 MLST8Q9BVC4 326 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 TEX101Q9BY14 249 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 IKZF4Q9H2S9 585 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 GREM2Q9H772 168 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 GOLGA6AQ9NYA3 693 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 TRPS1Q9UHF7 1281 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 TUBD1Q9UJT1 453 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 INTUQ9ULD6 942 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 PNMA8BQ9ULN7 279 aaPredicted RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 GOLGA6L6A8MZA4 724 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 LEFTY2O00292 366 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 OFD1O75665 1012 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 ZRANB2O95218 330 aaKnown RBP eCLIP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 U2AF1L5P0DN76 240 aaPredicted RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 GSPT1P15170 499 aaKnown RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 KRT4P19013 534 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 MAKP20794 623 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 CTSSP25774 331 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 ZFP36P26651 326 aaKnown RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 ADSLP30566 484 aaPredicted RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 ADKP55263 362 aaKnown RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 U2AF1Q01081 240 aaKnown RBP eCLIP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 MEF2AQ02078 507 aaPredicted RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 FSTL1Q12841 308 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 MINDY4Q4G0A6 757 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 FAM102BQ5T8I3 360 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 Q6ZPA2 131 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 HTR3DQ70Z44 454 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 CATIPQ7Z7H3 387 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 C14orf80Q86SX3 495 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 LDLRAD3Q86YD5 345 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 SYT12Q8IV01 421 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 VRK3Q8IV63 474 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 CAMKK1Q8N5S9 505 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 MAGEB6Q8N7X4 407 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 DPF2Q92785 391 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 CHFRQ96EP1 664 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 CAMKK2Q96RR4 588 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 CDC5LQ99459 802 aaKnown RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 NUP88Q99567 741 aaPredicted RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 SPON1Q9HCB6 807 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 TCF7L1Q9HCS4 588 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 NMRK2Q9NPI5 230 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 RBM12Q9NTZ6 932 aaKnown RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 EIF2B4Q9UI10 523 aaKnown RBP3.16□□□□□ -1.9
PTPRC-208ENST00000427110 SERPINB13Q9UIV8 391 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 HDAC5Q9UQL6 1122 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 RPTORQ8N122 1335 aa3.16□□□□□ -1.9
PTPRC-208ENST00000427110 FAM171A2A8MVW0 826 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 AHRRA9YTQ3 701 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 PRPF3O43395 683 aaKnown RBP3.15□□□□□ -1.91
PTPRC-208ENST00000427110 AP1G1O43747 822 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 LPXNO60711 386 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 PHF2O75151 1096 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 GYPEP15421 78 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 HSPA6P17066 643 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 ECHS1P30084 290 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 MCAMP43121 646 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 RNASE9P60153 205 aaKnown RBP3.15□□□□□ -1.91
PTPRC-208ENST00000427110 TGFB2P61812 414 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 APBA1Q02410 837 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 VPS72Q15906 364 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 GFOD2Q3B7J2 385 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 RRP12Q5JTH9 1297 aaKnown RBP3.15□□□□□ -1.91
PTPRC-208ENST00000427110 PRAMEF14Q5SWL7 426 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 NXNQ6DKJ4 435 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 CXorf57Q6NSI4 855 aaKnown RBP3.15□□□□□ -1.91
PTPRC-208ENST00000427110 PPP4R4Q6NUP7 873 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 RHOT1Q8IXI2 618 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 TCEAL8Q8IYN2 117 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 GRAMD1CQ8IYS0 662 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 GPR156Q8NFN8 814 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 SLC35B2Q8TB61 432 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 CCHCR1Q8TD31 782 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 SLC25A43Q8WUT9 341 aaPredicted RBP3.15□□□□□ -1.91
PTPRC-208ENST00000427110 SNX33Q8WV41 574 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 HDAC10Q969S8 669 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 COA7Q96BR5 231 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 PHACTR3Q96KR7 559 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 FAM193BQ96PV7 902 aaPredicted RBP3.15□□□□□ -1.91
PTPRC-208ENST00000427110 C7orf25Q9BPX7 421 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 TTPALQ9BTX7 342 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 LDAHQ9H6V9 325 aa3.15□□□□□ -1.91
PTPRC-208ENST00000427110 GPRC5DQ9NZD1 345 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms