RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 UNC45BQ8IWX7 931 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CTAGE3PQ8IX95 158 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 C12orf50Q8NA57 414 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TM6SF1Q9BZW5 370 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TUT1Q9H6E5 874 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RXFP1Q9HBX9 757 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KCNJ14Q9UNX9 436 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 MAP3K2Q9Y2U5 619 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 H0YJX3 145 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 FBP2O00757 339 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CYP2C9P11712 490 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RASGRF1Q13972 1273 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 C6orf52Q5T4I8 152 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RFPL4BQ6ZWI9 263 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 COL23A1Q86Y22 540 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CALML4Q96GE6 196 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 COQ3Q9NZJ6 369 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 H3BSA7 217 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TPBGLP0DKB5 382 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 LDLRAP1Q5SW96 308 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 MB21D1Q8N884 522 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PBKQ96KB5 322 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ABHD10Q9NUJ1 306 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CHD1O14646 1710 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ATP10BO94823 1461 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CDC27P30260 824 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 STARD8Q92502 1023 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CUEDC2Q9H467 287 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PLCH2O75038 1416 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 MATN2O00339 956 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CRYZL1O95825 349 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CHRNB1P11230 501 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 LINC00301Q8NCQ3 95 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 FNDC8Q8TC99 324 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 VPS39Q96JC1 886 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ERP44Q9BS26 406 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TUBB6Q9BUF5 446 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 NOX1Q9Y5S8 564 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ZMYM6O95789 1325 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 YTHDC2Q9H6S0 1430 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PLS3P13797 630 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ITGA9Q13797 1035 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RSBN1Q5VWQ0 802 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ZSCAN5AQ9BUG6 496 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 VTA1Q9NP79 307 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SNRKQ9NRH2 765 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 GLULP15104 373 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC33Q8N5R6 958 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 EDC3Q96F86 508 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TIMMDC1Q9NPL8 285 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 HSFX1Q9UBD0 423 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PACSIN2Q9UNF0 486 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SLC8A2Q9UPR5 921 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 REXO2Q9Y3B8 237 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 FAM83GA6ND36 823 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KRT3P12035 628 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ATF3P18847 181 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PLIN5Q00G26 463 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 HERC2P3Q9BVR0 1158 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ANAPC5Q9UJX4 755 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SYCE1LA8MT33 242 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 OASLQ15646 514 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 MCRS1Q96EZ8 462 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 DTNAQ9Y4J8 743 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RANBP6O60518 1105 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TSC22D2O75157 780 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ALAS2P22557 587 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 BCAP31P51572 246 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 YWHAGP61981 247 aaKnown RBP eCLIP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CENPCQ03188 943 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ASIC2Q16515 512 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 MFSD6Q6ZSS7 791 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 IQCKQ8N0W5 287 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 FAM163AQ96GL9 167 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 DDX47Q9H0S4 455 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 DCLRE1BQ9H816 532 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC61Q9Y6R9 512 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ATP10AO60312 1499 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 BMP10O95393 424 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 AMPD2Q01433 879 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SNX17Q15036 470 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SPATA18Q8TC71 538 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 NRDE2Q9H7Z3 1164 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CAAP1Q9H8G2 361 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 RNF225M0QZC1 329 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ASNA1O43681 348 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 MYCLP12524 364 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CD97P48960 835 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 MCCD1P59942 119 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 DR1Q01658 176 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TAF1BQ53T94 588 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SGO2Q562F6 1265 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 UBE2UQ5VVX9 321 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ARL8BQ9NVJ2 186 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 STRIP2Q9ULQ0 834 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 GRM8O00222 908 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 GRK2P25098 689 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PMLP29590 882 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 FAM209AQ5JX71 171 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms