RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ARHGEF19Q8IW93 802 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 CCDC89Q8N998 374 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 ATL2Q8NHH9 583 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 TMC2Q8TDI7 906 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 SH3TC2Q8TF17 1288 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 CHURC1Q8WUH1 139 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 PSPC1Q8WXF1 523 aaKnown RBP11.77□□□□□ -0.52
LIMS1-207ENST00000422797 TTC25Q96NG3 672 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 NT5C1BQ96P26 610 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 LXNQ9BS40 222 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 ZNF577Q9BSK1 485 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 ABCF3Q9NUQ8 709 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 PRR12Q9ULL5 1215 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 RBBP6Q7Z6E9 1792 aaKnown RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 PSTPIP1O43586 416 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CHRNB2P17787 502 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 MARCKSL1P49006 195 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 GPC3P51654 580 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 BPIFB4P59827 614 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 GTF2BQ00403 316 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 FMO1Q01740 532 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 RASA2Q15283 850 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 MTFR1Q15390 333 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 ZKSCAN8Q15776 578 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CMPK2Q5EBM0 449 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 NUGGCQ68CJ6 796 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 KRT39Q6A163 491 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 PADI6Q6TGC4 694 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 VSTM1Q6UX27 236 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 ASRGL1Q7L266 308 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 NOP9Q86U38 636 aaKnown RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 FAM160B2Q86V87 743 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CCDC25Q86WR0 208 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 TDRPQ86YL5 185 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 SIAH1Q8IUQ4 282 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 AGGF1Q8N302 714 aaeCLIP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 SAMD3Q8N6K7 520 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CNKSR1Q969H4 720 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 UIMC1Q96RL1 719 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 TGS1Q96RS0 853 aaKnown RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 UNC45AQ9H3U1 944 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 TMEM8AQ9HCN3 771 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 FGFR1OP2Q9NVK5 253 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 HSPBP1Q9NZL4 362 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CTNNAL1Q9UBT7 734 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 ANAPC5Q9UJX4 755 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 SERPINA10Q9UK55 444 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 SMG5Q9UPR3 1016 aaKnown RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 STARD13Q9Y3M8 1113 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 IGF2BP3O00425 579 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 ABLIM1O14639 778 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 MAGEB2O15479 319 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CHMP2AO43633 222 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 DCTN3O75935 186 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 SGPL1O95470 568 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 ANP32DO95626 131 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 BRAFP15056 766 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CYP11B1P15538 503 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 NPR1P16066 1061 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 ALDH1B1P30837 517 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 ALDH3A1P30838 453 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 HOXA13P31271 388 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 SLCO1A2P46721 670 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 RASSF2P50749 326 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 NFIAQ12857 509 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CLEC16AQ2KHT3 1053 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 TRIM72Q6ZMU5 477 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 TEX9Q8N6V9 391 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 INPP5DQ92835 1189 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 CFAP57Q96MR6 1250 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 TMEM237Q96Q45 408 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 PCDHB18PQ96TA0 734 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 TRIM6Q9C030 488 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 RANBP17Q9H2T7 1088 aaKnown RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 LRRC4CQ9HCJ2 640 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 HERC5Q9UII4 1024 aaKnown RBP11.76□□□□□ -0.53
LIMS1-207ENST00000422797 PTPN22Q9Y2R2 807 aa11.76□□□□□ -0.53
LIMS1-207ENST00000422797 SRCAPQ6ZRS2 3230 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 IPO5O00410 1097 aaKnown RBP11.75□□□□□ -0.53
LIMS1-207ENST00000422797 RIMBP2O15034 1052 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 PRKAR2AP13861 404 aaKnown RBP11.75□□□□□ -0.53
LIMS1-207ENST00000422797 SCP2P22307 547 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 MAPK4P31152 587 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 MSH2P43246 934 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 GCLMP48507 274 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 SCNN1DP51172 638 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 ALDH5A1P51649 535 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-207ENST00000422797 GCNT1Q02742 428 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 PPP3CAQ08209 521 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 MYO1EQ12965 1108 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 NAA25Q14CX7 972 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 CCNG2Q16589 344 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 LONRF1Q17RB8 773 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 STRIP1Q5VSL9 837 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 ZNF365Q70YC5 407 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 MIER3Q7Z3K6 550 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 AMIGO3Q86WK7 504 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 ZDHHC14Q8IZN3 488 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 DAW1Q8N136 415 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms