RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ANKRD36BP1Q96IX9 119 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 POP1Q99575 1024 aaKnown RBP18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 TMEM117Q9H0C3 514 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 INTS2Q9H0H0 1204 aaKnown RBP18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 CHST12Q9NRB3 414 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 TOPORSQ9NS56 1045 aaPredicted RBP18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 SQORQ9Y6N5 450 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 ANK1P16157 1881 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 CENPFP49454 3210 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 A0A1W2PQJ5 194 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 TNNC2P02585 160 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 KRT9P35527 623 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 PIK3CAP42336 1068 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 KCNMA1Q12791 1236 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 LMBRD2Q68DH5 695 aaPredicted RBP18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 SLC39A5Q6ZMH5 540 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 LRRC8DQ7L1W4 858 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 FBXL13Q8NEE6 735 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 CCDC112Q8NEF3 446 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 EDEM3Q9BZQ6 932 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 C11orf49Q9H6J7 331 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 PLCB1Q9NQ66 1216 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 ZNHIT6Q9NWK9 470 aaKnown RBP18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 CEP72Q9P209 647 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 CAPN11Q9UMQ6 739 aa18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 R3HCC1Q9Y3T6 440 aaKnown RBP18.53■□□□□ 0.56
CCDC28B-202ENST00000421922 TTC26A0AVF1 554 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 PMM2O15305 246 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 SELPP16109 830 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 PON1P27169 355 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 CD52P31358 61 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 ADKP55263 362 aaKnown RBP18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 ZBED6P86452 979 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 TFAMQ00059 246 aaKnown RBP18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 LPIN1Q14693 890 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 C1orf220Q5T0J3 134 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 CD302Q8IX05 232 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 CACTINQ8WUQ7 758 aaKnown RBP18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 APOL6Q9BWW8 343 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 EIF2AQ9BY44 585 aaKnown RBP18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 IMPG2Q9BZV3 1241 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 DAAM1Q9Y4D1 1078 aa18.52■□□□□ 0.56
CCDC28B-202ENST00000421922 SLC9A1P19634 815 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 RFX1P22670 979 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 FXR1P51114 621 aaKnown RBP eCLIP18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 MCCD1P59942 119 aaPredicted RBP18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 POLR2FP61218 127 aaKnown RBP18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 GOLGA8FQ08AF8 430 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 GOLGA8DPQ0D2H9 430 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 DUOXA2Q1HG44 320 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 TRIM65Q6PJ69 517 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 SV2AQ7L0J3 742 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 LRRC8AQ8IWT6 810 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 EHBP1Q8NDI1 1231 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 SPAG5Q96R06 1193 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 PANX2Q96RD6 677 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 NUCKS1Q9H1E3 243 aaKnown RBP18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 ASB7Q9H672 318 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 ERVK-5Q9HDB9 667 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 SNTG2Q9NY99 539 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 PADI3Q9ULW8 664 aa18.51■□□□□ 0.55
CCDC28B-202ENST00000421922 CD4P01730 458 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 ACTN1P12814 892 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 RAB27AP51159 221 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 CLDN10P78369 228 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 TRPC3Q13507 836 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 ARID5BQ14865 1188 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 TMEM132DQ14C87 1099 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 TRIM60Q495X7 471 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 EPC2Q52LR7 807 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 WDR44Q5JSH3 913 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 ANKRD33Q7Z3H0 272 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 TMEM192Q8IY95 271 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 TC2NQ8N9U0 490 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 OR8K1Q8NGG5 319 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 DIS3LQ8TF46 1054 aaKnown RBP18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 NT5C1BQ96P26 610 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 TTYH3Q9C0H2 523 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 NXF3Q9H4D5 531 aaKnown RBP18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 PLEKHA5Q9HAU0 1116 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 NLRC4Q9NPP4 1024 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 RAB20Q9NX57 234 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 PARP2Q9UGN5 583 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 ATP11BQ9Y2G3 1177 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 TANC1Q9C0D5 1861 aa18.5■□□□□ 0.55
CCDC28B-202ENST00000421922 LACTBL1A8MY62 500 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 PITPNM1O00562 1244 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 RAPGEF1Q13905 1077 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 KLHDC7AQ5VTJ3 777 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 RRAGAQ7L523 313 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 NECAB2Q7Z6G3 386 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 NT5DC4Q86YG4 428 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 ZNF830Q96NB3 372 aaPredicted RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 TOX2Q96NM4 488 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 MTMR12Q9C0I1 747 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 AGO3Q9H9G7 860 aaKnown RBP18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 C1orf112Q9NSG2 853 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 ABHD10Q9NUJ1 306 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 APEX2Q9UBZ4 518 aa18.49■□□□□ 0.55
CCDC28B-202ENST00000421922 IPPQ9Y573 584 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms