RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 GDAQ9Y2T3 454 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 STK25O00506 426 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 ADAM12O43184 909 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 FSHRP23945 695 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 IGFBP6P24592 240 aaPredicted RBP16.33■□□□□ 0.2
RPS28-201ENST00000417088 CCT6AP40227 531 aaKnown RBP16.33■□□□□ 0.2
RPS28-201ENST00000417088 FXR2P51116 673 aaKnown RBP eCLIP16.33■□□□□ 0.2
RPS28-201ENST00000417088 ELAVL2Q12926 359 aaKnown RBP16.33■□□□□ 0.2
RPS28-201ENST00000417088 PSMD5Q16401 504 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 NT5DC1Q5TFE4 455 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 HAUS3Q68CZ6 603 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 GRASPQ7Z6J2 395 aaPredicted RBP16.33■□□□□ 0.2
RPS28-201ENST00000417088 ST13P5Q8NFI4 369 aaPredicted RBP16.33■□□□□ 0.2
RPS28-201ENST00000417088 FBXO18Q8NFZ0 1043 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 GPR152Q8TDT2 470 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 BHMT2Q9H2M3 363 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 CA14Q9ULX7 337 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 DOCK6Q96HP0 2047 aa16.33■□□□□ 0.2
RPS28-201ENST00000417088 VPS13AQ96RL7 3174 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 HNRNPA1P09651 372 aaKnown RBP eCLIP16.32■□□□□ 0.2
RPS28-201ENST00000417088 RBM25P49756 843 aaKnown RBP16.32■□□□□ 0.2
RPS28-201ENST00000417088 EFNA5P52803 228 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 NTHL1P78549 312 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 HTR4Q13639 388 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 NBR1Q14596 966 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 ANGPT1Q15389 498 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 DCAF4L1Q3SXM0 396 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 LIN9Q5TKA1 542 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 KIFAP3Q92845 792 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 IFT74Q96LB3 600 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 KIAA1024Q9UPX6 916 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 NUMBLQ9Y6R0 609 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 SPTBN4Q9H254 2564 aa16.32■□□□□ 0.2
RPS28-201ENST00000417088 TMEM189-UBE2V1I3L0A0 370 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 C8AP07357 584 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 FGFR3P22607 806 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 TRAPPC10P48553 1259 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 RAB33AQ14088 237 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 GLRA4Q5JXX5 417 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 PPM1LQ5SGD2 360 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 ATF7IP2Q5U623 682 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 PDXDC1Q6P996 788 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 CD300LGQ6UXG3 332 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.31■□□□□ 0.2
RPS28-201ENST00000417088 NKD2Q969F2 451 aaPredicted RBP16.31■□□□□ 0.2
RPS28-201ENST00000417088 PPP1R10Q96QC0 940 aaKnown RBP16.31■□□□□ 0.2
RPS28-201ENST00000417088 RPP25Q9BUL9 199 aaKnown RBP16.31■□□□□ 0.2
RPS28-201ENST00000417088 TBC1D17Q9HA65 648 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 DAXXQ9UER7 740 aaPredicted RBP16.31■□□□□ 0.2
RPS28-201ENST00000417088 LRWD1Q9UFC0 647 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 CDH7Q9ULB5 785 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 ZFP37Q9Y6Q3 630 aaPredicted RBP16.31■□□□□ 0.2
RPS28-201ENST00000417088 GVINP1Q7Z2Y8 2422 aa16.31■□□□□ 0.2
RPS28-201ENST00000417088 VWA8A3KMH1 1905 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 K7ERI5 159 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 CCL16O15467 120 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 B3GAT3O94766 335 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 HOXA9P31269 272 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 OR1D2P34982 312 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 HMGN5P82970 282 aaKnown RBP16.3■□□□□ 0.2
RPS28-201ENST00000417088 GNL2Q13823 731 aaKnown RBP16.3■□□□□ 0.2
RPS28-201ENST00000417088 PDIA5Q14554 519 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 ERICH6BQ5W0A0 696 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 DCLRE1AQ6PJP8 1040 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 RSPO2Q6UXX9 243 aaPredicted RBP16.3■□□□□ 0.2
RPS28-201ENST00000417088 FAM184AQ8NB25 1140 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 FGF14Q92915 247 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 ZSCAN31Q96LW9 406 aaPredicted RBP16.3■□□□□ 0.2
RPS28-201ENST00000417088 SLC2A4RGQ9NR83 387 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 DDX19AQ9NUU7 478 aaKnown RBP16.3■□□□□ 0.2
RPS28-201ENST00000417088 NOL7Q9UMY1 257 aaKnown RBP16.3■□□□□ 0.2
RPS28-201ENST00000417088 TNFSF13BQ9Y275 285 aa16.3■□□□□ 0.2
RPS28-201ENST00000417088 XYLBO75191 536 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 RFX1P22670 979 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 U2AF2P26368 475 aaKnown RBP eCLIP16.29■□□□□ 0.2
RPS28-201ENST00000417088 TOB1P50616 345 aaPredicted RBP16.29■□□□□ 0.2
RPS28-201ENST00000417088 CLCNKBP51801 687 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 PTGDRQ13258 359 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 UPP1Q16831 310 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 AXDND1Q5T1B0 1012 aaPredicted RBP16.29■□□□□ 0.2
RPS28-201ENST00000417088 PHLDB3Q6NSJ2 640 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 PARM1Q6UWI2 310 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 DAW1Q8N136 415 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 CEP120Q8N960 986 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 IGSF22Q8N9C0 903 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 ITFG1Q8TB96 612 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 SLC7A14Q8TBB6 771 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 SNX29Q8TEQ0 813 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 FGF13Q92913 245 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 UROC1Q96N76 676 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 GOLGA2P5Q9HBQ8 144 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 ARHGEF3Q9NR81 526 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 MTRRQ9UBK8 725 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 POLIQ9UNA4 740 aa16.29■□□□□ 0.2
RPS28-201ENST00000417088 SMIM28A0A1B0GU29 152 aa16.28■□□□□ 0.2
RPS28-201ENST00000417088 E9PMD0 336 aa16.28■□□□□ 0.2
RPS28-201ENST00000417088 POU2F2P09086 479 aa16.28■□□□□ 0.2
RPS28-201ENST00000417088 TKTP29401 623 aaKnown RBP16.28■□□□□ 0.2
RPS28-201ENST00000417088 GRM5P41594 1212 aa16.28■□□□□ 0.2
RPS28-201ENST00000417088 NPTX2P47972 431 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms