RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 FAM171A1Q5VUB5 890 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 EEF1DP3Q658K8 133 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 SLC27A1Q6PCB7 646 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 NOSTRINQ8IVI9 506 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 PJA1Q8NG27 643 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 LNX1Q8TBB1 728 aaPredicted RBP14.28□□□□□ -0.12
LINC00339-202ENST00000416769 ING5Q8WYH8 240 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 KXD1Q9BQD3 176 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 KIFC3Q9BVG8 833 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 PLEKHA4Q9H4M7 779 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 PDZD7Q9H5P4 517 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 ZDHHC7Q9NXF8 308 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 SNTG2Q9NY99 539 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 FNIP2Q9P278 1114 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 ORC3Q9UBD5 711 aaPredicted RBP14.28□□□□□ -0.12
LINC00339-202ENST00000416769 STK39Q9UEW8 545 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 SSX2IPQ9Y2D8 614 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 SIT1Q9Y3P8 196 aa14.28□□□□□ -0.12
LINC00339-202ENST00000416769 PATJQ8NI35 1801 aa14.27□□□□□ -0.12
LINC00339-202ENST00000416769 I3L4J1 428 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 JAK2O60674 1132 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 DGAT1O75907 488 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 RECQL4O94761 1208 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 LYPLA2O95372 231 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 C8AP07357 584 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 SPATA31C1P0DKV0 1188 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 LIG1P18858 919 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 TXKP42681 527 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 HMGN5P82970 282 aaKnown RBP14.27□□□□□ -0.13
LINC00339-202ENST00000416769 FOXK2Q01167 660 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 PSMD5Q16401 504 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 CALCRLQ16602 461 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 GLRA4Q5JXX5 417 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 CD300LGQ6UXG3 332 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 EXOC8Q8IYI6 725 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 FGF13Q92913 245 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 TTC12Q9H892 705 aaPredicted RBP14.27□□□□□ -0.13
LINC00339-202ENST00000416769 SLC2A4RGQ9NR83 387 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 POLIQ9UNA4 740 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 F5P12259 2224 aa14.27□□□□□ -0.13
LINC00339-202ENST00000416769 SF3B1O75533 1304 aaKnown RBP eCLIP14.26□□□□□ -0.13
LINC00339-202ENST00000416769 BTBD18B2RXH4 712 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 MED24O75448 989 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 KRT2P35908 639 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 TUSC3Q13454 348 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 PHLDB3Q6NSJ2 640 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 CYP26C1Q6V0L0 522 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 ERMP1Q7Z2K6 904 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 C1orf210Q8IVY1 113 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 SLFN12Q8IYM2 578 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 TMEM130Q8N3G9 435 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 SLC7A14Q8TBB6 771 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 HDAC7Q8WUI4 952 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 PIK3R5Q8WYR1 880 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 HINFPQ9BQA5 517 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 TTPALQ9BTX7 342 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 PLA2G2FQ9BZM2 168 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 GOLGA2P5Q9HBQ8 144 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.26□□□□□ -0.13
LINC00339-202ENST00000416769 ANKEF1Q9NU02 776 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.26□□□□□ -0.13
LINC00339-202ENST00000416769 CDH7Q9ULB5 785 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 PCDHA12Q9UN75 941 aa14.26□□□□□ -0.13
LINC00339-202ENST00000416769 CACNA1BQ00975 2339 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 SHISA7A6NL88 538 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 NR1I2O75469 434 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 ATP2B1P20020 1258 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 STARD6P59095 220 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 POU5F1BQ06416 359 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 SLC5A9Q2M3M2 681 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 PPM1LQ5SGD2 360 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 CDCA2Q69YH5 1023 aaPredicted RBP14.25□□□□□ -0.13
LINC00339-202ENST00000416769 TSSK4Q6SA08 328 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 NPAS3Q8IXF0 933 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 FAM177A1Q8N128 213 aaPredicted RBP14.25□□□□□ -0.13
LINC00339-202ENST00000416769 SUMF1Q8NBK3 374 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 C3orf58Q8NDZ4 430 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 WASF1Q92558 559 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 MTMR9Q96QG7 549 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 NFKBIZQ9BYH8 718 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 FZD8Q9H461 694 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 DNMT3BQ9UBC3 853 aaKnown RBP14.25□□□□□ -0.13
LINC00339-202ENST00000416769 SMC3Q9UQE7 1217 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 GDAQ9Y2T3 454 aa14.25□□□□□ -0.13
LINC00339-202ENST00000416769 BAG4O95429 457 aaKnown RBP14.24□□□□□ -0.13
LINC00339-202ENST00000416769 OR1D2P34982 312 aa14.24□□□□□ -0.13
LINC00339-202ENST00000416769 NCBP1Q09161 790 aaKnown RBP14.24□□□□□ -0.13
LINC00339-202ENST00000416769 UBXN2BQ14CS0 331 aa14.24□□□□□ -0.13
LINC00339-202ENST00000416769 PCBP1Q15365 356 aaKnown RBP eCLIP14.24□□□□□ -0.13
LINC00339-202ENST00000416769 MLF2Q15773 248 aaPredicted RBP14.24□□□□□ -0.13
LINC00339-202ENST00000416769 ELMSAN1Q6PJG2 1045 aa14.24□□□□□ -0.13
LINC00339-202ENST00000416769 CATSPER3Q86XQ3 398 aa14.24□□□□□ -0.13
LINC00339-202ENST00000416769 CEP120Q8N960 986 aa14.24□□□□□ -0.13
LINC00339-202ENST00000416769 NXPE3Q969Y0 559 aa14.24□□□□□ -0.13
LINC00339-202ENST00000416769 CCDC43Q96MW1 224 aaKnown RBP14.24□□□□□ -0.13
LINC00339-202ENST00000416769 DDX23Q9BUQ8 820 aaKnown RBP14.24□□□□□ -0.13
LINC00339-202ENST00000416769 CCDC113Q9H0I3 377 aa14.24□□□□□ -0.13
LINC00339-202ENST00000416769 DPP7Q9UHL4 492 aa14.24□□□□□ -0.13
LINC00339-202ENST00000416769 NEMFO60524 1076 aa14.23□□□□□ -0.13
LINC00339-202ENST00000416769 HSP90AA1P07900 732 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms