RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 ZBED1O96006 694 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 GSPT1P15170 499 aaKnown RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 RGS3P49796 1198 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 TUBP50607 506 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 SMAD3P84022 425 aaKnown RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 MMRN1Q13201 1228 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 TRIM25Q14258 630 aaKnown RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 SMAD2Q15796 467 aaKnown RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 EEF1DP3Q658K8 133 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 GPAT2Q6NUI2 795 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 FAM129CQ86XR2 697 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 TXLNBQ8N3L3 684 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 MPP5Q8N3R9 675 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 OR2C3Q8N628 320 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 PPHLN1Q8NEY8 458 aaKnown RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 CCHCR1Q8TD31 782 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 PCDHA3Q9Y5H8 950 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 HMX3A6NHT5 357 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 ADARB2-AS1A8MUL3 147 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 B4E171 279 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 MASP2O00187 686 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 TNFRSF6BO95407 300 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 NTRK1P04629 796 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 GYS1P13807 737 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 RAC2P15153 192 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 KCNA3P22001 575 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 ITGA8P53708 1063 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 HTRA4P83105 476 aaPredicted RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 PPARAQ07869 468 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 HP1BP3Q5SSJ5 553 aaPredicted RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 LDHDQ86WU2 507 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 CREG2Q8IUH2 290 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 GOLGA6L1Q8N7Z2 621 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 CHST13Q8NET6 341 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 PLBD2Q8NHP8 589 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 HERVK_113Q902F9 699 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 HPS3Q969F9 1004 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 UBE2FQ969M7 185 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 SH3KBP1Q96B97 665 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 PLVAPQ9BX97 442 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 ATP6V0A4Q9HBG4 840 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 SEPSECSQ9HD40 501 aaKnown RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 TBC1D23Q9NUY8 699 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.98□□□□□ -1.93
MCF2-204ENST00000414978 SPO11Q9Y5K1 396 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 MRC1P22897 1456 aa2.98□□□□□ -1.93
MCF2-204ENST00000414978 A0A0A0MRY4 1105 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 FAM170BA6NMN3 283 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 F8W8V4 182 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 A1BGP04217 495 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 VAV1P15498 845 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 MAP2K2P36507 400 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 CASP2P42575 452 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 GRK6P43250 576 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 BCAR1P56945 870 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 SNRPNP63162 240 aaKnown RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 PAN2Q504Q3 1202 aaKnown RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 ANKRD39Q53RE8 183 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ZBTB41Q5SVQ8 909 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 OR8H2Q8N162 312 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 RNF141Q8WVD5 230 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 TNPO1Q92973 898 aaKnown RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 SLC35A4Q96G79 324 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 SLC12A9Q9BXP2 914 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ZMAT4Q9H898 229 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 TFCP2L1Q9NZI6 479 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ABCF2Q9UG63 623 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 PCOLCE2Q9UKZ9 415 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 PCDHA1Q9Y5I3 950 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 USP47Q96K76 1375 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 FAM95CA0A1B0GW59 222 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 MAN2B1O00754 1011 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 FIBPO43427 364 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 PLOD3O60568 738 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 AVPP01185 164 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 SCG5P05408 212 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 LSP1P33241 339 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 CCR5P51681 352 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 NUCB1Q02818 461 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 SHROOM1Q2M3G4 852 aaPredicted RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 ARHGAP15Q53QZ3 475 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 C3orf38Q5JPI3 329 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 AGAP9Q5VTM2 703 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 TOM1L2Q6ZVM7 507 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 USP45Q70EL2 814 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 STK32CQ86UX6 486 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 MFSD4AQ8N468 514 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 CCDC89Q8N998 374 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 STT3BQ8TCJ2 826 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ASB12Q8WXK4 309 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 GMCL1Q96IK5 515 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 CCDC140Q96MF4 163 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 GBP4Q96PP9 640 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 PPP1R16BQ96T49 567 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ZDHHC5Q9C0B5 715 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 PRKRIP1Q9H875 184 aaPredicted RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 MBIPQ9NS73 344 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 GDF2Q9UK05 429 aaPredicted RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 OGDHLQ9ULD0 1010 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 KCNH3Q9ULD8 1083 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms