RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 CALCAP01258 141 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 MXD4Q14582 209 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-204ENST00000412568 GPC2Q8N158 579 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC110Q8TBZ0 833 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 RANBP17Q9H2T7 1088 aaKnown RBP11.91□□□□□ -0.5
PTPRF-204ENST00000412568 SCINQ9Y6U3 715 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 TARSL2A2RTX5 802 aaKnown RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 MIF4GDA9UHW6 222 aaKnown RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 ZNF286BP0CG31 522 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 FGFR4P22455 802 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 TBXAS1P24557 533 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 PPM1FP49593 454 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 FKBP1AP62942 108 aaKnown RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC137Q6PK04 289 aaKnown RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 TRAPPC11Q7Z392 1133 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 MKNK1Q9BUB5 465 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 MTMR12Q9C0I1 747 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 CYP2C9P11712 490 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 COMTP21964 271 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 TMED2Q15363 201 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 GEN1Q17RS7 908 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 SV2AQ7L0J3 742 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 ZC3H18Q86VM9 953 aaKnown RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 THOC1Q96FV9 657 aaKnown RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 TMEM8AQ9HCN3 771 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 PHLPP1O60346 1717 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 WDR91A4D1P6 747 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 RTN2O75298 545 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 MMEP08473 750 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 CETPP11597 493 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 HSPA6P17066 643 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 BRD2P25440 801 aaKnown RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 CARSP49589 748 aaKnown RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 BEND6Q5SZJ8 279 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 FKBP1CQ5VVH2 108 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC60Q8IWA6 550 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-204ENST00000412568 SH2D3CQ8N5H7 860 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 SPATA20Q8TB22 786 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 SLC5A5Q92911 643 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 KAT5Q92993 513 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 TATDN2Q93075 761 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 SLC35C1Q96A29 364 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 MTMR8Q96EF0 704 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 SMC6Q96SB8 1091 aa11.9□□□□□ -0.5
PTPRF-204ENST00000412568 RGPD1P0DJD0 1748 aa11.9□□□□□ -0.51
PTPRF-204ENST00000412568 ALDH3A1P30838 453 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 TNFAIP2Q03169 654 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 FIGNQ5HY92 759 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 CEP128Q6ZU80 1094 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 TEX2Q8IWB9 1127 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 BEST2Q8NFU1 509 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 UBA3Q8TBC4 463 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 CAMKK2Q96RR4 588 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 TAF1DQ9H5J8 278 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-204ENST00000412568 BCAS3Q9H6U6 928 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 DMGDHQ9UI17 866 aaKnown RBP11.89□□□□□ -0.51
PTPRF-204ENST00000412568 SYNGAP1Q96PV0 1343 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 FRMD3A2A2Y4 597 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 PSMD10O75832 226 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 SLC4A1P02730 911 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 SPATA31C1P0DKV0 1188 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 GTF2H1P32780 548 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 ARL4AP40617 200 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 JAG1P78504 1218 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 SARNPP82979 210 aaKnown RBP11.89□□□□□ -0.51
PTPRF-204ENST00000412568 TMEM132BQ14DG7 1078 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 SMTNL2Q2TAL5 461 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 CFAP157Q5JU67 520 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 CYP4A22Q5TCH4 519 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 KIAA1841Q6NSI8 718 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 KCNV1Q6PIU1 500 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 C4orf19Q8IY42 314 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 PPFIBP2Q8ND30 876 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 RUNDC3BQ96NL0 473 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 STK38LQ9Y2H1 464 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 LCP1P13796 627 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 PEX19P40855 299 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 CBWD6Q4V339 395 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 CBWD3Q5JTY5 395 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 CBWD5Q5RIA9 395 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 DNAAF3Q8N9W5 541 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 SHISA4Q96DD7 197 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 PARK7Q99497 189 aaKnown RBP11.89□□□□□ -0.51
PTPRF-204ENST00000412568 RASGRF2O14827 1237 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 HBP1O60381 514 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 GRIN3BO60391 1043 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 SNHG28P0DPA3 235 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 DLG4P78352 724 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 RRP1BQ14684 758 aaKnown RBP11.89□□□□□ -0.51
PTPRF-204ENST00000412568 E2F5Q15329 346 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 XRRA1Q6P2D8 792 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 SLC47A2Q86VL8 602 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 METTL23Q86XA0 190 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 OR2W6PQ8NHA6 318 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 GDAP1Q8TB36 358 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 CPB2Q96IY4 423 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 MCEEQ96PE7 176 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 TIPINQ9BVW5 301 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 OLFML3Q9NRN5 406 aa11.89□□□□□ -0.51
PTPRF-204ENST00000412568 LRFN2Q9ULH4 789 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms