RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ACAP3Q96P50 834 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 MMRN2Q9H8L6 949 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 PTPRHQ9HD43 1115 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 TOPORSQ9NS56 1045 aaPredicted RBP15.42■□□□□ 0.06
SKA1-202ENST00000398452 PRKAG2Q9UGJ0 569 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 STAG3L1P0CL83 205 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 CD52P31358 61 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 AP3M2P53677 418 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 LPIN1Q14693 890 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 NR1I3Q14994 352 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 PSMD6Q15008 389 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 BRSK2Q8IWQ3 736 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 CD302Q8IX05 232 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 MFSD14AQ96MC6 490 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 NAP1L5Q96NT1 182 aaPredicted RBP15.41■□□□□ 0.06
SKA1-202ENST00000398452 FTHL17Q9BXU8 183 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 PPP1R12CQ9BZL4 782 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 PRDM5Q9NQX1 630 aaPredicted RBP15.41■□□□□ 0.06
SKA1-202ENST00000398452 PADI3Q9ULW8 664 aa15.41■□□□□ 0.06
SKA1-202ENST00000398452 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.41■□□□□ 0.06
SKA1-202ENST00000398452 SIP14410 1827 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 A0A1W2PPC1 479 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 ADRB2P07550 413 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 HOXA11P31270 313 aaPredicted RBP15.4■□□□□ 0.06
SKA1-202ENST00000398452 GTF2H1P32780 548 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 BMP8BP34820 402 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 GRM5P41594 1212 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 SEZ6Q53EL9 994 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 GBP6Q6ZN66 633 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 TMC6Q7Z403 805 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 PPFIBP1Q86W92 1011 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 CCDC150Q8NCX0 1101 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 CACTINQ8WUQ7 758 aaKnown RBP15.4■□□□□ 0.06
SKA1-202ENST00000398452 SEPT8Q92599 483 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 APBB2Q92870 758 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 IQCDQ96DY2 449 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 APOL6Q9BWW8 343 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 IFIH1Q9BYX4 1025 aaKnown RBP15.4■□□□□ 0.06
SKA1-202ENST00000398452 ERVK-5Q9HDB9 667 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 PARP2Q9UGN5 583 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 CPSF3Q9UKF6 684 aaKnown RBP15.4■□□□□ 0.06
SKA1-202ENST00000398452 BOLA1Q9Y3E2 137 aa15.4■□□□□ 0.06
SKA1-202ENST00000398452 A0A1W2PQC6 194 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 ABLIM1O14639 778 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 P4HA2O15460 535 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 AP5Z1O43299 807 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 PHACTR2O75167 634 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 TNNC2P02585 160 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 TMEM191BP0C7N4 346 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 TRIM49P0CI25 452 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 TRIM49CP0CI26 452 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 MXI1P50539 228 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 MYL7Q01449 175 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 FAAP100Q0VG06 881 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 BIRC3Q13489 604 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 TRIM14Q14142 442 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 SPECC1LQ69YQ0 1117 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 KRT39Q6A163 491 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 SPC24Q8NBT2 197 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 PARD3BQ8TEW8 1205 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 SLC35C1Q96A29 364 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 PGBD4Q96DM1 585 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 ANKRD36BP1Q96IX9 119 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 CGRRF1Q99675 332 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 LBHD1Q9BQE6 289 aaPredicted RBP15.39■□□□□ 0.05
SKA1-202ENST00000398452 NUP58Q9BVL2 599 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 HAPLN2Q9GZV7 340 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 ASB7Q9H672 318 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 SZT2Q5T011 3432 aa15.39■□□□□ 0.05
SKA1-202ENST00000398452 XPOTO43592 962 aaKnown RBP15.38■□□□□ 0.05
SKA1-202ENST00000398452 NRDCO43847 1150 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 ITGA4P13612 1032 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 RAG1P15918 1043 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 TRIM21P19474 475 aaKnown RBP15.38■□□□□ 0.05
SKA1-202ENST00000398452 IBSPP21815 317 aaPredicted RBP15.38■□□□□ 0.05
SKA1-202ENST00000398452 RFC2P35250 354 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 TNFSF9P41273 254 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 GCLMP48507 274 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 FMO5P49326 533 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 EXOC3L4Q17RC7 722 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 MIIPQ5JXC2 388 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 APTXQ7Z2E3 356 aaKnown RBP15.38■□□□□ 0.05
SKA1-202ENST00000398452 NT5DC4Q86YG4 428 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 WDR49Q8IV35 697 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 VSTM4Q8IW00 320 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 TDHQ8IZJ6 230 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 ZSWIM2Q8NEG5 633 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 NEK11Q8NG66 645 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 BORCS6Q96GS4 357 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 RPS6KC1Q96S38 1066 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 ADAM2Q99965 735 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 EIF2AQ9BY44 585 aaKnown RBP15.38■□□□□ 0.05
SKA1-202ENST00000398452 AGO3Q9H9G7 860 aaKnown RBP15.38■□□□□ 0.05
SKA1-202ENST00000398452 PLEKHA5Q9HAU0 1116 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 TMEM8AQ9HCN3 771 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 PDE11AQ9HCR9 933 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 C1orf112Q9NSG2 853 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 FAM105AQ9NUU6 356 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 SNTG2Q9NY99 539 aa15.38■□□□□ 0.05
SKA1-202ENST00000398452 IMPACTQ9P2X3 320 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms