RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 DHX40Q8IX18 779 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 HACE1Q8IYU2 909 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 LRRC43Q8N309 656 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 LRRC52Q8N7C0 313 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 TAF4BQ92750 862 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 CPB2Q96IY4 423 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 LIMA1Q9UHB6 759 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 FBXL5Q9UKA1 691 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 CNTN6Q9UQ52 1028 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 PIN4Q9Y237 131 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 GREB1Q4ZG55 1949 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ARL5CA6NH57 179 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 CLDN3O15551 220 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 CTSHP09668 335 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 WNT7BP56706 349 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 TMEM62Q0P6H9 643 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 UPP1Q16831 310 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 LMO3Q8TAP4 145 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 PARD3BQ8TEW8 1205 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 STAMQ92783 540 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 HPS3Q969F9 1004 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ZBTB45Q96K62 511 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 LBHD1Q9BQE6 289 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 RSAD1Q9HA92 442 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ANO10Q9NW15 660 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 HSFX1Q9UBD0 423 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 OBSL1O75147 1896 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 CCDC169A6NNP5 214 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 INO80B-WBP1J3KQ70 363 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ATICP31939 592 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 LIG4P49917 911 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 PAK1Q13153 545 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ZSCAN23Q3MJ62 389 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 INTS8Q75QN2 995 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 SLC39A11Q8N1S5 342 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 DPF3Q92784 378 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 JAKMIP2Q96AA8 810 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 DDX27Q96GQ7 796 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ZMAT2Q96NC0 199 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ADPGKQ9BRR6 497 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 CBWD1Q9BRT8 395 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 NXF3Q9H4D5 531 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 METTL14Q9HCE5 456 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 CHST7Q9NS84 486 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 SLC38A7Q9NVC3 462 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 MARCH5Q9NX47 278 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 MIOSQ9NXC5 875 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 CEP72Q9P209 647 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ITGA11Q9UKX5 1188 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ZC3H11AO75152 810 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 KRT18P05783 430 aaKnown RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 ITGA4P13612 1032 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 RPL13P26373 211 aaKnown RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 NOMO2Q5JPE7 1267 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 RNF39Q9H2S5 420 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 RXFP1Q9HBX9 757 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 ZMYND8Q9ULU4 1186 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 PCDHB7Q9Y5E2 793 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 SMIM28A0A1B0GU29 152 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 PSMA7O14818 248 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 AKAP3O75969 853 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 LAG3P18627 525 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 FGFR4P22455 802 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 EEF1GP26641 437 aaKnown RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 DPCR1Q3MIW9 517 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 ZNF568Q3ZCX4 644 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 LRSAM1Q6UWE0 723 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 TMEM184AQ6ZMB5 413 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 DDX53Q86TM3 631 aaKnown RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 EFCAB13Q8IY85 973 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 TMEM192Q8IY95 271 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 COLGALT1Q8NBJ5 622 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 RASSF8Q8NHQ8 419 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 ZNF516Q92618 1163 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 ACAP3Q96P50 834 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 PKMYT1Q99640 499 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 YBX2Q9Y2T7 364 aaKnown RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 SLC4A7Q9Y6M7 1214 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 COL4A2P08572 1712 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 LINC01553A4QN01 128 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 STX10O60499 249 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 B4GALT3O60512 393 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 RECQL4O94761 1208 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 PSMC2P35998 433 aaKnown RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 TYRO3Q06418 890 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 TUSC3Q13454 348 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 MEA1Q16626 185 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 ZACNQ401N2 412 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 EPC2Q52LR7 807 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 MIIPQ5JXC2 388 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 BEST2Q8NFU1 509 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 HDAC7Q8WUI4 952 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 CCDC94Q9BW85 323 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 TOPORSQ9NS56 1045 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-202ENST00000394943 TBC1D13Q9NVG8 400 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 FNIP2Q9P278 1114 aa7.63□□□□□ -1.19
LIMA1-202ENST00000394943 LRRIQ3A6PVS8 624 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 SSBP05455 408 aaKnown RBP eCLIP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 ATP2A2P16615 1042 aaKnown RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 TYMPP19971 482 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms