RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ZNF157P51786 506 aaPredicted RBP27.13■■□□□ 1.93
SHOX2-201ENST00000389589 IRF5Q13568 498 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 SURF1Q15526 300 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 LMBRD2Q68DH5 695 aaPredicted RBP27.13■■□□□ 1.93
SHOX2-201ENST00000389589 C16orf70Q9BSU1 422 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 ISCUQ9H1K1 167 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 TTLL13PA6NNM8 815 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 FAM189A1O60320 539 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 HARSP12081 509 aaKnown RBP27.13■■□□□ 1.93
SHOX2-201ENST00000389589 GZMAP12544 262 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 HOXD8P13378 290 aaPredicted RBP27.13■■□□□ 1.93
SHOX2-201ENST00000389589 SMPD1P17405 629 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 NOP9Q86U38 636 aaKnown RBP27.13■■□□□ 1.93
SHOX2-201ENST00000389589 NPLOC4Q8TAT6 608 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 CPA4Q9UI42 421 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 CCDC151A5D8V7 595 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 PROZP22891 400 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 PDE6CP51160 858 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 IGBP1P78318 339 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 MPZL3Q6UWV2 235 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 SLFN11Q7Z7L1 901 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 ZBTB33Q86T24 672 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 PI4K2AQ9BTU6 479 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 ZHX1Q9UKY1 873 aaPredicted RBP27.12■■□□□ 1.93
SHOX2-201ENST00000389589 PTPRJQ12913 1337 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 DOCK3Q8IZD9 2030 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 H3BRB1 525 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 INO80B-WBP1J3KQ70 363 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 CES2O00748 559 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 ABLIM1O14639 778 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 RTN2O75298 545 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 RHOXF2BP0C7M4 288 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 TMOD1P28289 359 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 PHKA2P46019 1235 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 RPS6KA1Q15418 735 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 PALB2Q86YC2 1186 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 WDR49Q8IV35 697 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 LINC01465Q8N7H1 131 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 OR6J1Q8NGC5 347 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 TAF4BQ92750 862 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 RHOXF2Q9BQY4 288 aa27.12■■□□□ 1.93
SHOX2-201ENST00000389589 INO80BQ9C086 356 aaPredicted RBP27.12■■□□□ 1.93
SHOX2-201ENST00000389589 TUT1Q9H6E5 874 aaKnown RBP27.12■■□□□ 1.93
SHOX2-201ENST00000389589 VNN1O95497 513 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 ZNF286BP0CG31 522 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 CYP11B1P15538 503 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 CHRNB2P17787 502 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 CXCR5P32302 372 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 MBTD1Q05BQ5 628 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 CFAP221Q4G0U5 840 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 MORN1Q5T089 497 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 ATF7IP2Q5U623 682 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 SLC47A2Q86VL8 602 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 SLC35G2Q8TBE7 412 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 PTPRHQ9HD43 1115 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 PRMT7Q9NVM4 692 aaPredicted RBP27.11■■□□□ 1.93
SHOX2-201ENST00000389589 TAS2R14Q9NYV8 317 aa27.11■■□□□ 1.93
SHOX2-201ENST00000389589 MMP3P08254 477 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 CDR2Q01850 454 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 DGKDQ16760 1214 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 IFNLR1Q8IU57 520 aaPredicted RBP27.1■■□□□ 1.93
SHOX2-201ENST00000389589 RHOT2Q8IXI1 618 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 DHX38Q92620 1227 aaKnown RBP27.1■■□□□ 1.93
SHOX2-201ENST00000389589 PSMB7Q99436 277 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 ZNF446Q9NWS9 450 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 IGF2BP3O00425 579 aaKnown RBP eCLIP27.1■■□□□ 1.93
SHOX2-201ENST00000389589 GJB1P08034 283 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 ABCB4P21439 1286 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 MAP2K5Q13163 448 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 TCEAL1Q15170 157 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 TAF1CQ15572 869 aaPredicted RBP27.1■■□□□ 1.93
SHOX2-201ENST00000389589 FAM187BQ17R55 369 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 MMGT1Q8N4V1 131 aa27.1■■□□□ 1.93
SHOX2-201ENST00000389589 CPSF3Q9UKF6 684 aaKnown RBP27.1■■□□□ 1.93
SHOX2-201ENST00000389589 ANK1P16157 1881 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 PHACTR2O75167 634 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 KIF4AO95239 1232 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 FTLP02792 175 aaPredicted RBP27.09■■□□□ 1.93
SHOX2-201ENST00000389589 MCM3P25205 808 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 BPIFB4P59827 614 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 CCDC70Q6NSX1 233 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 THAP2Q9H0W7 228 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 ARFGAP3Q9NP61 516 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 TNFSF13BQ9Y275 285 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 TARSL2A2RTX5 802 aaKnown RBP27.09■■□□□ 1.93
SHOX2-201ENST00000389589 KRT5P13647 590 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 TNFSF9P41273 254 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 HADHBP55084 474 aaKnown RBP27.09■■□□□ 1.93
SHOX2-201ENST00000389589 FMO1Q01740 532 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 TMEM132AQ24JP5 1023 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 SEZ6Q53EL9 994 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 CC2D1AQ6P1N0 951 aaPredicted RBP27.09■■□□□ 1.93
SHOX2-201ENST00000389589 SPATA4Q8NEY3 305 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 HNRNPLLQ8WVV9 542 aaKnown RBP27.09■■□□□ 1.93
SHOX2-201ENST00000389589 FAM84AQ96KN4 292 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 PNKPQ96T60 521 aa27.09■■□□□ 1.93
SHOX2-201ENST00000389589 ATP8B1O43520 1251 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 ERLIN1O75477 346 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 TBXAS1P24557 533 aaPredicted RBP27.08■■□□□ 1.93
SHOX2-201ENST00000389589 ZNF568Q3ZCX4 644 aa27.08■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms