RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 PLA2R1Q13018 1463 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 SNX2O60749 519 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 PCYT1AP49585 367 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 FOXO4P98177 505 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 KCNA1Q09470 495 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 CAPRIN1Q14444 709 aaKnown RBP12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 TMEM179Q6ZVK1 233 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 CCNYL1Q8N7R7 359 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 TMEM35BQ8NCS4 154 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 GRAMD1AQ96CP6 724 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 ZBTB18Q99592 522 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 SPATA31A6Q5VVP1 1343 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 EMSYQ7Z589 1322 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 GSG1L2A8MUP6 293 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 PPP1R18Q6NYC8 613 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 RASGRP2Q7LDG7 609 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 TEX9Q8N6V9 391 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 SLC35G2Q8TBE7 412 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 DNAJC7Q99615 494 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 EIF2AK1Q9BQI3 630 aaKnown RBP12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 MROH7-TTC4A0A0A0MT08 1334 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 CLDN3O15551 220 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 PGM1P36871 562 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 POU5F1BQ06416 359 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 ATXN7L3BQ96GX2 97 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 CCDC90BQ9GZT6 254 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 DDX56Q9NY93 547 aaKnown RBP12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 SUN2Q9UH99 717 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 ARL2BPQ9Y2Y0 163 aa12.67□□□□□ -0.38
PCDHA9-201ENST00000378122 ARHGAP10A1A4S6 786 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 ASMTLO95671 621 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 NAALADL2Q58DX5 795 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 RNF180Q86T96 592 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 RFFLQ8WZ73 363 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 FAM96AQ9H5X1 160 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 DCP1AQ9NPI6 582 aaPredicted RBP12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 SNX5Q9Y5X3 404 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 FAM205CA6NFA0 338 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 DCDC2CA8MYV0 355 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 NR1I3Q14994 352 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 NPHS2Q9NP85 383 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 LCMT1Q9UIC8 334 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 ZNF609O15014 1411 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 AGPAT5Q9NUQ2 364 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 RAB23Q9ULC3 237 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 HMBSP08397 361 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 EXOSC10Q01780 885 aaKnown RBP12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 LRRC8EQ6NSJ5 796 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 KIF17Q9P2E2 1029 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 MYO3BQ8WXR4 1341 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 PAPOLAP51003 745 aaKnown RBP12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 CCNI2Q6ZMN8 369 aaPredicted RBP12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 RNF135Q8IUD6 432 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 RHOT1Q8IXI2 618 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 SRBD1Q8N5C6 995 aaKnown RBP12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 IFT43Q96FT9 208 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 SMAD5Q99717 465 aaKnown RBP12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 NUDT12Q9BQG2 462 aa12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 GBA2Q9HCG7 927 aaPredicted RBP12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 MRPL40Q9NQ50 206 aaKnown RBP12.66□□□□□ -0.38
PCDHA9-201ENST00000378122 CYP26A1O43174 497 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 ANP32DO95626 131 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 VEGFAP15692 232 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 IRX1P78414 480 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 MFSD4BQ5TF39 518 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 BTBD6Q96KE9 485 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 POLR3FQ9H1D9 316 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 CD248Q9HCU0 757 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 ZNRF3Q9ULT6 936 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 MINPP1Q9UNW1 487 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 SEC24DO94855 1032 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 VMP1Q96GC9 406 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 RMDN3Q96TC7 470 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 RBM12Q9NTZ6 932 aaKnown RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 PHF2O75151 1096 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 SMARCA1P28370 1054 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 NME3Q13232 169 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 ZNF568Q3ZCX4 644 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 TEDDM1Q5T9Z0 273 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 FRMD5Q7Z6J6 570 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 TRABDQ9H4I3 376 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 SLC40A1Q9NP59 571 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 CPA4Q9UI42 421 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 ITIH6Q6UXX5 1313 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 RTN2O75298 545 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 MKRN4PQ13434 485 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 CYTH1Q15438 398 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 TCEA2Q15560 299 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 CCDC92Q53HC0 331 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 ATP11CQ8NB49 1132 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 HNRNPCL2B2RXH8 293 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 HNRNPCL1O60812 293 aaKnown RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 MOCS2O96007 188 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 AGTP01019 485 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 CIITAP33076 1130 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 KDSRQ06136 332 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 TFDP2Q14188 446 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 HIC1Q14526 733 aa12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 RARS2Q5T160 578 aaKnown RBP12.65□□□□□ -0.38
PCDHA9-201ENST00000378122 LXNQ9BS40 222 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms