RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SOX5P35711 763 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 SREBF1P36956 1147 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 SEPT2Q15019 361 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 TSHZ3Q63HK5 1081 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 OLFML1Q6UWY5 402 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 ZNF572Q7Z3I7 529 aaPredicted RBP3.09□□□□□ -1.92
VPS13A-206ENST00000376646 ZNF575Q86XF7 245 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 PLXDC1Q8IUK5 500 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 PQLC1Q8N2U9 271 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 OR7D4Q8NG98 312 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 OR56A1Q8NGH5 318 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 OR2I1PQ8NGU4 316 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 HOXB13Q92826 284 aaPredicted RBP3.09□□□□□ -1.92
VPS13A-206ENST00000376646 RAB24Q969Q5 203 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 MRI1Q9BV20 369 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 ACE2Q9BYF1 805 aaPredicted RBP3.09□□□□□ -1.92
VPS13A-206ENST00000376646 CCM2LQ9NUG4 571 aaPredicted RBP3.09□□□□□ -1.92
VPS13A-206ENST00000376646 DNAJC28Q9NX36 388 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 RUVBL1Q9Y265 456 aaKnown RBP3.09□□□□□ -1.92
VPS13A-206ENST00000376646 SIK3Q9Y2K2 1263 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 PCDHGA2Q9Y5H1 932 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 KIAA0355O15063 1070 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 DDX6P26196 483 aaKnown RBP eCLIP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 HSD3B2P26439 372 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 PCSK1P29120 753 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 CNGA1P29973 690 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 ADRA1BP35368 520 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 CLK3P49761 638 aaKnown RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 PER3P56645 1201 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 CLRN1P58418 232 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 MRPS9P82933 396 aaKnown RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 GUCY1B3Q02153 619 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 FOXI1Q12951 378 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 FAM47AQ5JRC9 791 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 PDZD4Q76G19 769 aaPredicted RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 UBE3BQ7Z3V4 1068 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 ARHGEF19Q8IW93 802 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 LCORLQ8N3X6 602 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 PPM1NQ8N819 430 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 ZFP28Q8NHY6 868 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 DPF2Q92785 391 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 AHCYL2Q96HN2 611 aaKnown RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 ORAI2Q96SN7 254 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 SLKQ9H2G2 1235 aaPredicted RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 PRDM13Q9H4Q3 707 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 SYNPO2LQ9H987 977 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 FBXO34Q9NWN3 711 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 SLC23A1Q9UHI7 598 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 USP25Q9UHP3 1055 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 ZNHIT2Q9UHR6 403 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 AJAP1Q9UKB5 411 aaPredicted RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 TMA7Q9Y2S6 64 aaKnown RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 ACTL7AQ9Y615 435 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 EPN1Q9Y6I3 576 aaPredicted RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 SALL3Q9BXA9 1300 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 MARCH11A6NNE9 402 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 LMNAP02545 664 aaKnown RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 GSPT1P15170 499 aaKnown RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 POU3F3P20264 500 aaPredicted RBP3.08□□□□□ -1.92
VPS13A-206ENST00000376646 SLC6A9P48067 706 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 AGAP9Q5VTM2 703 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 SLC44A3Q8N4M1 653 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 CCHCR1Q8TD31 782 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 RIOX1Q9H6W3 641 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 BCO1Q9HAY6 547 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 KLHL11Q9NVR0 708 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 SYBUQ9NX95 663 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 DNM3Q9UQ16 869 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 FPGT-TNNI3KV9GXZ4 949 aa3.08□□□□□ -1.92
VPS13A-206ENST00000376646 BRINP1O60477 761 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 PHF2O75151 1096 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 ITGAMP11215 1152 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 MGAT1P26572 445 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 MCAMP43121 646 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 MUM1L1Q5H9M0 696 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 RRP12Q5JTH9 1297 aaKnown RBP3.07□□□□□ -1.92
VPS13A-206ENST00000376646 B3GNTL1Q67FW5 361 aaPredicted RBP3.07□□□□□ -1.92
VPS13A-206ENST00000376646 ZNF529Q6P280 563 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 MAPKAPK5Q8IW41 473 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 ZGPATQ8N5A5 531 aaKnown RBP3.07□□□□□ -1.92
VPS13A-206ENST00000376646 WDR66Q8TBY9 1149 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 SENP6Q9GZR1 1112 aaPredicted RBP3.07□□□□□ -1.92
VPS13A-206ENST00000376646 TOR3AQ9H497 397 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 GREM2Q9H772 168 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 RBM12Q9NTZ6 932 aaKnown RBP3.07□□□□□ -1.92
VPS13A-206ENST00000376646 CLCA2Q9UQC9 943 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 ARHGEF17Q96PE2 2063 aaPredicted RBP3.07□□□□□ -1.92
VPS13A-206ENST00000376646 GAGE12BA1L429 117 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 GAGE12HA6NDE8 117 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 GPR39O43194 453 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 CFIP05156 583 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 SNRPA1P09661 255 aaKnown RBP3.07□□□□□ -1.92
VPS13A-206ENST00000376646 GUCY1A2P33402 732 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 PURAQ00577 322 aaKnown RBP3.07□□□□□ -1.92
VPS13A-206ENST00000376646 OCA2Q04671 838 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 SCAPQ12770 1279 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 MALLQ13021 153 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 TAF7LQ5H9L4 462 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 SUPT20HQ8NEM7 779 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 NTN5Q8WTR8 489 aaPredicted RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms