RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 PDCD4Q53EL6 469 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 KYAT3Q6YP21 454 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 AP3S1Q92572 193 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CDK19Q9BWU1 502 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ANAPC2Q9UJX6 822 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 MPZL2O60487 215 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CA4P22748 312 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 EEF1DP29692 281 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 AP2S1P53680 142 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 AP3B2Q13367 1082 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 INPP5AQ14642 412 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 MORF4L2Q15014 288 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 WNT8AQ9H1J5 351 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PIH1D3Q9NQM4 214 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 WHRNQ9P202 907 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 NPPAP01160 153 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PDHA1P08559 390 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PEX5P50542 639 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CAMK1Q14012 370 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 TMEM154Q6P9G4 183 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ITGB3P05106 788 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 RECQLP46063 649 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 SKOR1P84550 965 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 TFDP2Q14188 446 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 DPP8Q6V1X1 898 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 SETD9Q8NE22 299 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 RAD54BQ9Y620 910 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 POTECB2RU33 542 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 SAT1P21673 171 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 MEA1Q16626 185 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ERAP2Q6P179 960 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 INPP5FQ9Y2H2 1132 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PTPN23Q9H3S7 1636 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 WDR62O43379 1518 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CALB1P05937 261 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 FAM204AQ9H8W3 233 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 A0A087WXM4 84 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ATP1A2P50993 1020 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PMS1P54277 932 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 IRAK1BP1Q5VVH5 260 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PBXIP1Q96AQ6 731 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 YME1L1Q96TA2 773 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 NVLO15381 856 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 GCLMP48507 274 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 TRAPPC11Q7Z392 1133 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 C8orf59Q8N0T1 100 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 B3GALT6Q96L58 329 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 NUDCD1Q96RS6 583 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 TMOD2Q9NZR1 351 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 APEX2Q9UBZ4 518 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ASNSP08243 561 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PAMP19021 973 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 GTF3C2Q8WUA4 911 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 KAT2BQ92831 832 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 LRRC59Q96AG4 307 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 DDIT3P35638 169 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 RGS7P49802 495 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PDAP1Q13442 181 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PDIA5Q14554 519 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 KIF22Q14807 665 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 UTS2BQ765I0 119 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 DRAXINQ8NBI3 349 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 RAPGEF5Q92565 580 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 SYMPKQ92797 1274 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 OSBPL11Q9BXB4 747 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 SNAP23O00161 211 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CSE1LP55060 971 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 RIT1Q92963 219 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 TDRD1Q9BXT4 1180 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 NPAP1Q9NZP6 1156 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 MX2P20592 715 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CCNCP24863 283 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ANXA11P50995 505 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 COPAP53621 1224 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CD81P60033 236 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 BARGINQ6ZT62 677 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 SPATA21Q7Z572 469 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 GJB4Q9NTQ9 266 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 RAB19A4D1S5 217 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 IFRD1O00458 451 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 RINT1Q6NUQ1 792 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 NADKO95544 446 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 HMOX2P30519 316 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PIK3CGP48736 1102 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 DPYSQ14117 519 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 SLFN12LQ6IEE8 588 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 NAT16Q8N8M0 369 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 USP13Q92995 863 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ATXN10Q9UBB4 475 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 A2MP01023 1474 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 TRIM3O75382 744 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CHMLP26374 656 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ARHGEF5Q12774 1597 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PRKG1Q13976 671 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 ELF2Q15723 593 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 CIR1Q86X95 450 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 PLEKHM2Q8IWE5 1019 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 GUF1Q8N442 669 aaKnown RBP3.96□□□□□ -1.78
SYNE1-207ENST00000367255 MAP4K1Q92918 833 aa3.96□□□□□ -1.78
SYNE1-207ENST00000367255 DCLK3Q9C098 648 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms